User: Parham

gravatar for Parham
Parham1.5k
Reputation:
1,500
Status:
Trusted
Location:
Sweden
Website:
https://www.researchga...
Last seen:
19 hours ago
Joined:
6 years, 4 months ago
Email:
p******@gmail.com

Posts by Parham

<prev • 242 results • page 1 of 25 • next >
0
votes
1
answer
184
views
1
answer
AnnotationHub Error in value[[3L]](cond) : failed to create index
... Hi, I started to work with AnnotationHub package but it seems no matter what options I give for cache, it is not able to create a local hub. Firstly, I used default cache path for windows which is under "C:/Users/user.name/AppData/Local/AnnotationHub/AnnotationHub/Cache/" by `hub <- AnnotationHu ...
cache annotationhub annotation written 3 months ago by Parham1.5k • updated 3 months ago by Kevin Blighe66k
0
votes
0
answers
97
views
0
answers
Split phased haplotypes of same person coming from same parents
... Hi, I have phased haplotypes of two samples from same person. However, since they are coming from malignant and healthy tissue, the genotypes might slightly be different. I would like to split the Hapcut2 phased bam files according to parental haplotypes and then compare the haplotypes coming from ...
indel haplotype variant snp written 4 months ago by Parham1.5k
0
votes
24
answers
58k
views
24
answers
Comment: A: The Biostar Handbook. A bioinformatics e-book for beginners.
... Hi, Some small things I found that need to be corrected. In chapter "common data types", the first paragraph ends incompletely. Also, in the same chapter the title "Is there a list of “all” resources?" is repeated from the previous chapter. ...
written 12 months ago by Parham1.5k
1
vote
0
answers
405
views
0
answers
Biostar Handbook, student or professional?
... Hi, I am a molecular biologist who learn RNA-seq analysis with the help of online forums like biostars and some expert supervision. I am fluent in R and beginner in Python. I wonder which version of Biostars handbook suits me better as there is no content available for either to decide based on it. ...
professional handbook student written 12 months ago by Parham1.5k
0
votes
3
answers
928
views
3
answers
Comment: C: Making a data table more comprehensive
... Thank you all for your great and instructive solutions! ...
written 3.9 years ago by Parham1.5k
5
votes
3
answers
928
views
3
answers
Making a data table more comprehensive
... Hi, I want to make a data table that I have, to something that is more comprehensive. In abstract this is what I intend to do: > df cond_1 cond_2 cond_3 cond_4 1 a a b e 2 b b c f 3 c d g > df_t cond_ ...
R data.frame transform written 3.9 years ago by Parham1.5k • updated 3.9 years ago by mikhail.shugay3.4k
0
votes
1
answer
14k
views
1
answers
Comment: C: read.table does not read in all rows!
... Thanks a million for thorough explanation and troubleshoot! Very handy tips =) ...
written 3.9 years ago by Parham1.5k
0
votes
1
answer
14k
views
1
answers
Comment: C: read.table does not read in all rows!
... Thanks steve and Devon! read.delim works fine! ...
written 3.9 years ago by Parham1.5k
16
votes
1
answer
14k
views
1
answer
read.table does not read in all rows!
... Hi, I encountered a strange issue while reading in a data table from `txt` format. If I read it from `txt` by `read.table` it does not include all rows but if I convert to `csv` and read it with `read.csv` its perfect. Does someone know the issue or is it my code? This is the [file][1]. > ...
R read.table written 3.9 years ago by Parham1.5k • updated 8 months ago by Shicheng Guo8.4k
0
votes
5
answers
9.5k
views
5
answers
Comment: C: How to perform KEGG enrichment analyses on a set of genes
... Is there any alternate to kegg that is more recently updated? ...
written 4.0 years ago by Parham1.5k

Latest awards to Parham

Great Question 8 weeks ago, created a question with more than 5,000 views. For Error for "gpar" while using pheatmap!
Popular Question 3 months ago, created a question with more than 1,000 views. For Do you keep this batch or discard it?
Student 3 months ago, asked a question with at least 3 up-votes. For Error for "gpar" while using pheatmap!
Popular Question 4 months ago, created a question with more than 1,000 views. For How to find sequence patterns in genome?
Popular Question 4 months ago, created a question with more than 1,000 views. For BED reference for Pombe
Epic Question 6 months ago, created a question with more than 10,000 views. For Error for "gpar" while using pheatmap!
Great Question 9 months ago, created a question with more than 5,000 views. For Error for "gpar" while using pheatmap!
Great Question 12 months ago, created a question with more than 5,000 views. For Error for "gpar" while using pheatmap!
Epic Question 12 months ago, created a question with more than 10,000 views. For read.table does not read in all rows!
Popular Question 13 months ago, created a question with more than 1,000 views. For How to find sequence patterns in genome?
Popular Question 14 months ago, created a question with more than 1,000 views. For How to find sequence patterns in genome?
Popular Question 17 months ago, created a question with more than 1,000 views. For How to find sequence patterns in genome?
Popular Question 18 months ago, created a question with more than 1,000 views. For How to find sequence patterns in genome?
Popular Question 18 months ago, created a question with more than 1,000 views. For How to get geneID and not geneName from txdb made from a gff3 file?
Popular Question 19 months ago, created a question with more than 1,000 views. For How to get geneID and not geneName from txdb made from a gff3 file?
Popular Question 2.1 years ago, created a question with more than 1,000 views. For How to get geneID and not geneName from txdb made from a gff3 file?
Great Question 2.3 years ago, created a question with more than 5,000 views. For Error for "gpar" while using pheatmap!
Popular Question 2.3 years ago, created a question with more than 1,000 views. For How to get geneID and not geneName from txdb made from a gff3 file?
Popular Question 2.3 years ago, created a question with more than 1,000 views. For How to find sequence patterns in genome?
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Two questions about plotting a venn diagram!
Popular Question 2.4 years ago, created a question with more than 1,000 views. For How to get geneID and not geneName from txdb made from a gff3 file?
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Is there any easy way to replicate R packages between two machines?
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Error in systemPipeR
Popular Question 2.4 years ago, created a question with more than 1,000 views. For How to find sequence patterns in genome?
Popular Question 2.6 years ago, created a question with more than 1,000 views. For How to get geneID and not geneName from txdb made from a gff3 file?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1319 users visited in the last hour