User: Parham

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Parham1.5k
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Posts by Parham

<prev • 241 results • page 1 of 25 • next >
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Split phased haplotypes of same person coming from same parents
... Hi, I have phased haplotypes of two samples from same person. However, since they are coming from malignant and healthy tissue, the genotypes might slightly be different. I would like to split the Hapcut2 phased bam files according to parental haplotypes and then compare the haplotypes coming from ...
indel haplotype variant snp written 14 days ago by Parham1.5k
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Comment: A: The Biostar Handbook. A bioinformatics e-book for beginners.
... Hi, Some small things I found that need to be corrected. In chapter "common data types", the first paragraph ends incompletely. Also, in the same chapter the title "Is there a list of “all” resources?" is repeated from the previous chapter. ...
written 8 months ago by Parham1.5k
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Biostar Handbook, student or professional?
... Hi, I am a molecular biologist who learn RNA-seq analysis with the help of online forums like biostars and some expert supervision. I am fluent in R and beginner in Python. I wonder which version of Biostars handbook suits me better as there is no content available for either to decide based on it. ...
professional handbook student written 9 months ago by Parham1.5k
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Comment: C: Making a data table more comprehensive
... Thank you all for your great and instructive solutions! ...
written 3.6 years ago by Parham1.5k
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Making a data table more comprehensive
... Hi, I want to make a data table that I have, to something that is more comprehensive. In abstract this is what I intend to do: > df cond_1 cond_2 cond_3 cond_4 1 a a b e 2 b b c f 3 c d g > df_t cond_ ...
R data.frame transform written 3.6 years ago by Parham1.5k • updated 3.6 years ago by mikhail.shugay3.4k
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Comment: C: read.table does not read in all rows!
... Thanks a million for thorough explanation and troubleshoot! Very handy tips =) ...
written 3.6 years ago by Parham1.5k
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Comment: C: read.table does not read in all rows!
... Thanks steve and Devon! read.delim works fine! ...
written 3.6 years ago by Parham1.5k
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read.table does not read in all rows!
... Hi, I encountered a strange issue while reading in a data table from `txt` format. If I read it from `txt` by `read.table` it does not include all rows but if I convert to `csv` and read it with `read.csv` its perfect. Does someone know the issue or is it my code? This is the [file][1]. > ...
R read.table written 3.6 years ago by Parham1.5k • updated 4 months ago by Shicheng Guo8.2k
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Comment: C: How to perform KEGG enrichment analyses on a set of genes
... Is there any alternate to kegg that is more recently updated? ...
written 3.6 years ago by Parham1.5k
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Comment: C: Rmarkdown report from multiple images
... Thanks ddiez and zaag. It was a smart solution. Very big help! ...
written 3.7 years ago by Parham1.5k

Latest awards to Parham

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