User: Parham

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Parham1.4k
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Posts by Parham

<prev • 238 results • page 1 of 24 • next >
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Comment: C: Making a data table more comprehensive
... Thank you all for your great and instructive solutions! ...
written 2.8 years ago by Parham1.4k
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Making a data table more comprehensive
... Hi, I want to make a data table that I have, to something that is more comprehensive. In abstract this is what I intend to do: > df cond_1 cond_2 cond_3 cond_4 1 a a b e 2 b b c f 3 c d g > df_t cond_ ...
R data.frame transform written 2.8 years ago by Parham1.4k • updated 2.8 years ago by mikhail.shugay3.3k
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Comment: C: read.table does not read in all rows!
... Thanks a million for thorough explanation and troubleshoot! Very handy tips =) ...
written 2.8 years ago by Parham1.4k
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Comment: C: read.table does not read in all rows!
... Thanks steve and Devon! read.delim works fine! ...
written 2.8 years ago by Parham1.4k
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read.table does not read in all rows!
... Hi, I encountered a strange issue while reading in a data table from `txt` format. If I read it from `txt` by `read.table` it does not include all rows but if I convert to `csv` and read it with `read.csv` its perfect. Does someone know the issue or is it my code? This is the [file][1]. > ...
R read.table written 2.8 years ago by Parham1.4k • updated 2.8 years ago by Santosh Anand4.9k
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Comment: C: How to perform KEGG enrichment analyses on a set of genes
... Is there any alternate to kegg that is more recently updated? ...
written 2.9 years ago by Parham1.4k
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Comment: C: Rmarkdown report from multiple images
... Thanks ddiez and zaag. It was a smart solution. Very big help! ...
written 2.9 years ago by Parham1.4k
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Comment: C: Rmarkdown report from multiple images
... Thanks! Maybe I was not clear enough. Making the list is not a problem. The problem is that I can't make the list object work in insert image command. ```{r} files <- list.files(path="/path/to/files", pattern="*.png$", full.names=T, recursive=FALSE) ``` ![](files) It doesn't wo ...
written 2.9 years ago by Parham1.4k
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Rmarkdown report from multiple images
... Hi, I want to make an R markdown report and I want to include multiple images from a local folder (not from running code) into the report. However, since there are many images I prefer to use some form of automation (regex, etc) to include all the `.png` images in a folder. I was not successful so f ...
R knitr markdown pandoc written 2.9 years ago by Parham1.4k • updated 2.9 years ago by ddiez1.8k
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Comment: C: How to get geneID and not geneName from txdb made from a gff3 file?
... Here are the outputs. I ran the same codes for each release. Release 20 shows `GeneIDs` in the output which is good. However both them seems to not produce proper data when `transcriptsBy` is used. > txdb <- makeTxDbFromGFF("D:/Vbox_shared/Annotations_after_scilifelab/gff3_to_compare/Sch ...
written 3.3 years ago by Parham1.4k

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