User: Parham

gravatar for Parham
Parham1.4k
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Posts by Parham

<prev • 240 results • page 1 of 24 • next >
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Comment: A: The Biostar Handbook. A bioinformatics e-book for beginners.
... Hi, Some small things I found that need to be corrected. In chapter "common data types", the first paragraph ends incompletely. Also, in the same chapter the title "Is there a list of “all” resources?" is repeated from the previous chapter. ...
written 4 months ago by Parham1.4k
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Biostar Handbook, student or professional?
... Hi, I am a molecular biologist who learn RNA-seq analysis with the help of online forums like biostars and some expert supervision. I am fluent in R and beginner in Python. I wonder which version of Biostars handbook suits me better as there is no content available for either to decide based on it. ...
professional handbook student written 4 months ago by Parham1.4k
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Comment: C: Making a data table more comprehensive
... Thank you all for your great and instructive solutions! ...
written 3.3 years ago by Parham1.4k
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Making a data table more comprehensive
... Hi, I want to make a data table that I have, to something that is more comprehensive. In abstract this is what I intend to do: > df cond_1 cond_2 cond_3 cond_4 1 a a b e 2 b b c f 3 c d g > df_t cond_ ...
R data.frame transform written 3.3 years ago by Parham1.4k • updated 3.3 years ago by mikhail.shugay3.4k
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Comment: C: read.table does not read in all rows!
... Thanks a million for thorough explanation and troubleshoot! Very handy tips =) ...
written 3.3 years ago by Parham1.4k
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Comment: C: read.table does not read in all rows!
... Thanks steve and Devon! read.delim works fine! ...
written 3.3 years ago by Parham1.4k
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read.table does not read in all rows!
... Hi, I encountered a strange issue while reading in a data table from `txt` format. If I read it from `txt` by `read.table` it does not include all rows but if I convert to `csv` and read it with `read.csv` its perfect. Does someone know the issue or is it my code? This is the [file][1]. > ...
R read.table written 3.3 years ago by Parham1.4k • updated 14 days ago by Shicheng Guo8.1k
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Comment: C: How to perform KEGG enrichment analyses on a set of genes
... Is there any alternate to kegg that is more recently updated? ...
written 3.3 years ago by Parham1.4k
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Comment: C: Rmarkdown report from multiple images
... Thanks ddiez and zaag. It was a smart solution. Very big help! ...
written 3.3 years ago by Parham1.4k
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Comment: C: Rmarkdown report from multiple images
... Thanks! Maybe I was not clear enough. Making the list is not a problem. The problem is that I can't make the list object work in insert image command. ```{r} files <- list.files(path="/path/to/files", pattern="*.png$", full.names=T, recursive=FALSE) ``` ![](files) It doesn't wo ...
written 3.3 years ago by Parham1.4k

Latest awards to Parham

Great Question 4 months ago, created a question with more than 5,000 views. For Error for "gpar" while using pheatmap!
Epic Question 4 months ago, created a question with more than 10,000 views. For read.table does not read in all rows!
Popular Question 5 months ago, created a question with more than 1,000 views. For How to find sequence patterns in genome?
Popular Question 6 months ago, created a question with more than 1,000 views. For How to find sequence patterns in genome?
Popular Question 9 months ago, created a question with more than 1,000 views. For How to find sequence patterns in genome?
Popular Question 10 months ago, created a question with more than 1,000 views. For How to find sequence patterns in genome?
Popular Question 10 months ago, created a question with more than 1,000 views. For How to get geneID and not geneName from txdb made from a gff3 file?
Popular Question 11 months ago, created a question with more than 1,000 views. For How to get geneID and not geneName from txdb made from a gff3 file?
Popular Question 17 months ago, created a question with more than 1,000 views. For How to get geneID and not geneName from txdb made from a gff3 file?
Great Question 19 months ago, created a question with more than 5,000 views. For Error for "gpar" while using pheatmap!
Popular Question 19 months ago, created a question with more than 1,000 views. For How to find sequence patterns in genome?
Popular Question 19 months ago, created a question with more than 1,000 views. For How to get geneID and not geneName from txdb made from a gff3 file?
Popular Question 21 months ago, created a question with more than 1,000 views. For Error in systemPipeR
Popular Question 21 months ago, created a question with more than 1,000 views. For How to find sequence patterns in genome?
Popular Question 21 months ago, created a question with more than 1,000 views. For Is there any easy way to replicate R packages between two machines?
Popular Question 21 months ago, created a question with more than 1,000 views. For How to get geneID and not geneName from txdb made from a gff3 file?
Popular Question 21 months ago, created a question with more than 1,000 views. For Two questions about plotting a venn diagram!
Popular Question 23 months ago, created a question with more than 1,000 views. For How to get geneID and not geneName from txdb made from a gff3 file?
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Two questions about plotting a venn diagram!
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Is there any easy way to replicate R packages between two machines?
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Error in systemPipeR
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Bash tutorial for biologists?
Popular Question 2.5 years ago, created a question with more than 1,000 views. For How to find sequence patterns in genome?
Popular Question 2.5 years ago, created a question with more than 1,000 views. For How to get geneID and not geneName from txdb made from a gff3 file?
Epic Question 2.5 years ago, created a question with more than 10,000 views. For A few words for R beginners

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