User: Doo

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Doo240
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7 years, 9 months ago
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8 years, 9 months ago
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u1220

Posts by Doo

<prev • 14 results • page 1 of 2 • next >
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Comment: C: Bwa Aligner: How To Get Percentage Of Reads Aligned?
... Was talking about percentage of total reads aligned. Sorry for the confusion then. ...
written 8.0 years ago by Doo240
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Bwa Aligner: How To Get Percentage Of Reads Aligned?
... edited Bowtie provides an score e.g. 90% telling us how many reads could be mapped. How can I retrieve this from a BWA alignment? Is there a simple workflow available somewhere? Thanks ...
short aligner rna written 8.0 years ago by Doo240 • updated 8.0 years ago by Kanne420
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Comment: C: Cluster Peptide Sequences According Their Amino Acid Properties
... thanks. yes, aa for each position ...
written 8.0 years ago by Doo240
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Comment: C: Cluster Peptide Sequences According Their Amino Acid Properties
... hydrophobic, etc... ...
written 8.0 years ago by Doo240
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Cluster Peptide Sequences According Their Amino Acid Properties
... Do you know a tool where I can cluster peptide fregments (length = 13 AA) according their amino acid properties? e.g. PIAAIAPSPQQRK AAIAPSPQQRKEH ITNWDDMEKIWHH EIRSFNMPPFPPP Thanks ...
clustering written 8.0 years ago by Doo240 • updated 8.0 years ago by Chris190
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Answer: A: Rna-Seq Time Course Data
... Have a look at the Timecourse package in Bioconductor ...
written 8.0 years ago by Doo240
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Answer: A: Is There A Free Alternative To Ingenuity Pathway Analysis?
... Innate DB is also nice and handy. They have a lot of curators. http://www.innatedb.ca/ ...
written 8.7 years ago by Doo240
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Answer: A: How To Avoid False Negative And False Positive When Searching For Tfbs?
... Ernst et al. developed a score which indicates if a transcription factor physically can bind at the DNA by using a combination of epigenetics data (from GC content to histone modification to Chip-seq data, etc etc). Unfortunately, this is only for human afaik, but the transcriptional regulation migh ...
written 8.7 years ago by Doo240
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Good Thresholds For Miranda Microrna Predictions
... Dear community, since there are very experienced scientists among you, I would like to ask for some expertise: Aim is to compile miRNA predictions to get a table Genes vs microRNAs. I am absolutely aware that there is a tradeoff between false positives and false negatives, but if you had to make ...
prediction mirna written 8.7 years ago by Doo240 • updated 8.7 years ago by Larry_Parnell16k
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Comment: C: Can Be Micrornas Measured By Standard Microarrays?
... Thank you all for your answers. Appreciate it. Follow up on that: Why can I not just look at pri/pre-miRNAs instead? They should be longer than the processed miRNA. ...
written 8.7 years ago by Doo240

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