User: yangyongzhi2008

Reputation:
30
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New User
Location:
United States
Last seen:
4 years, 1 month ago
Joined:
5 years, 5 months ago
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Posts by yangyongzhi2008

<prev • 10 results • page 1 of 1 • next >
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Answer: A: No results of RepeatProteinMasker
... Change the RMblast with the ABblast, everything has been resolved. ...
written 4.1 years ago by yangyongzhi200830
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Answer: A: Problem running interproscan-5.15-54.0 for protein sequences
... I have resolved this error. Find the "src" folder and compile it. Replace the "prints" under the bin folder with the compiled file. This error has been resolved now. ...
written 4.1 years ago by yangyongzhi200830
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Problem running interproscan-5.15-54.0 for protein sequences
... Hello, I am using the standalone interproscan-5.15-54.0. I could run the given test_proteins file sucessfully however, when I am trying to run my protein sequences, it gives same erros. This is the sam question in biostar (https://www.biostars.org/p/155218/), but I can't find any useful information ...
interproscan written 4.1 years ago by yangyongzhi200830
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No results of RepeatProteinMasker
... Hello everyone, I was trying to run the RepeatProteinMasker with the newest Libraries (repeatmaskerlibraries-20150807.tar.gz). But I got no result of this software. The command line is below:  /home/share/tools/genome_annotation/RepeatMasker/RepeatMasker/RepeatProteinMask -engine ncbi -noLowSimple ...
genome assembly repeatmask software error written 4.1 years ago by yangyongzhi200830 • updated 2.2 years ago by wn13640
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Comment: C: The mate pairs of this library are oriented forward-forward (FF), which is not s
... I used this software to reverse and complement the read2.fq, but it doesn't work. The error still exists. Could you give me some other advice? ...
written 4.3 years ago by yangyongzhi200830
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The mate pairs of this library are oriented forward-forward (FF), which is not supported by ABySS.
... Hello everyone, When I used the ABySS 1.5.2 to assemble my genome, I got this error: Building the suffix array... Building the Burrows-Wheeler transform... Building the character occurrence table... Mateless           0 Unaligned    2237383  1.66% Singleton     135502  0.101% FR             18315 ...
assembly abyss written 4.3 years ago by yangyongzhi200830 • updated 4.3 years ago by Brian Bushnell17k
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Abyss 1.5.2: MergePaths failed
... Hellow evryone, I have use the abyss software with the version of 1.5.2 to assemble the genome. But I got an error message like that: MergePaths   -j45 -k35 -o snow-4.path2 snow-4.adj snow-4.path1 MergePaths: MergePaths.cpp:1299: ContigPath align(const ContigPath&, const ContigPath&, Conti ...
assembly abyss written 4.5 years ago by yangyongzhi200830
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Answer: A: orthomcl error: DBD::mysql::st execute failed: The table 'SimilarSequences' is
... One possible answer: https://stackoverflow.com/questions/730579/error-1114-hy000-the-table-is-full   ...
written 5.0 years ago by yangyongzhi200830
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orthomcl error: DBD::mysql::st execute failed: The table 'SimilarSequences' is full at ***
... When I use orthomclLoadBlast, I got an error message.    >DBD::mysql::st execute failed: The table 'SimilarSequences' is full at /tool/orthomcl/orthomclSoftware-v2.0.9/bin/orthomclLoadBlast line 39, <F> line 14. My "similarSequences.txt" file is about 2.5G and the command is `orthomclLoa ...
cluster orthomcl written 5.0 years ago by yangyongzhi200830 • updated 18 months ago by h.mon28k
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setting mcmctree parameters
... Hello everyone, I want to estimate the divergence time between species by the mcmctree in the paml software. I have read the tutorials. But I still have some questions. 1. The input data is codon sequences, 4-fold degeneration sites or 1st/2nd codon sites? 2. How to set the sigma2_gamma parameter ...
genome software error next-gen alignment written 5.5 years ago by yangyongzhi200830

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