User: gayachit

gravatar for gayachit
gayachit200
Reputation:
200
Status:
Trusted
Location:
India
Last seen:
2 weeks, 6 days ago
Joined:
6 years, 1 month ago
Email:
g*******@gmail.com

Posts by gayachit

<prev • 51 results • page 1 of 6 • next >
1
vote
0
answers
103
views
0
answers
Comment: C: metagenomic bacterial identify
... Have you gone through online materials that are available. There are so many bioinformatics analysis guides available. https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2593568/, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3351745/, https://www.researchgate.net/post/can_someone_guide_me_in_processing_th ...
written 9 weeks ago by gayachit200
0
votes
0
answers
103
views
0
answers
Comment: C: metagenomic bacterial identify
... What have done so far? What is fastS format? ...
written 9 weeks ago by gayachit200
0
votes
1
answer
137
views
1
answers
Comment: C: help me creating Prokka custom database
... This should help you: https://github.com/tseemann/prokka#databases https://github.com/tseemann/prokka/issues/210 ...
written 9 weeks ago by gayachit200
0
votes
0
answers
175
views
0
answers
Comment: C: Count duplicate sequence in fasta file using python
... Hi You should go through this link: https://stackoverflow.com/questions/55226949/how-to-get-the-count-of-duplicated-sequences-in-fasta-file-using-python You can easily redirect the output to csv or as you want ...
written 9 weeks ago by gayachit200
0
votes
1
answer
146
views
1
answers
Answer: A: Plasmid Phylogeny from Whole genome sequencing
... The best would be to sequence the plasmids and do a phylogeny but if you only have whole genome data, I think you would have to extract the plasmid sequences using tools like plasmid finder or plasmid seeker and do a phylogeny the same way as any other using tools like MEGA and MAFFT etc. For refere ...
written 11 weeks ago by gayachit200
1
vote
2
answers
165
views
2
answers
Answer: A: can I map multiple (>2) fast reads against assembly in bwa?
... Hi There are some posts similar to yours. Have a look. https://www.biostars.org/p/300534/ , https://www.biostars.org/p/134395/, https://www.biostars.org/p/377719/ ...
written 11 weeks ago by gayachit200
1
vote
1
answer
159
views
1
answers
Answer: C: Difference between genotype 0/1, 1/0, 0/2, 2/0?
... You need to read the manual carefully. Its there on page 5 under genotype fields. ...
written 3 months ago by gayachit200
0
votes
1
answer
123
views
1
answers
Comment: C: How to clean multiple protein sequences alignement in order to make a phylogenic
... MEGA itself has options to add, delete, trim sequences once you've aligned them. You can see the conserved and variable regions as well. Also you can refer : https://www.researchgate.net/post/Best_program_to_align_and_clean_up_sequences2 ...
written 3 months ago by gayachit200
0
votes
0
answers
177
views
0
answers
Comment: C: Extract 16S rRNA V6 region
... Read this: https://mothur.org/blog/2016/Customization-for-your-region/ Follow same for getting start and end position for V6 region ...
written 3 months ago by gayachit200
0
votes
0
answers
164
views
0
answers
Comment: C: Detecting Biomarkers from Time Series Gene Epression data
... Biomarker for what? Time series experiments usually have some external stimulus or process. It will be difficult to get a biomarker unless you narrow it down. As suggested by @ashish the table has a pretty good summary. ...
written 3 months ago by gayachit200

Latest awards to gayachit

Scholar 4 months ago, created an answer that has been accepted. For A: How to get the phastcons score for protein coding genes and lncRNAs?
Scholar 4 months ago, created an answer that has been accepted. For A: How to get the phastcons score for protein coding genes and lncRNAs?
Scholar 4 months ago, created an answer that has been accepted. For A: How to get the phastcons score for protein coding genes and lncRNAs?
Popular Question 3.4 years ago, created a question with more than 1,000 views. For How to run Genscan on large files
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Do we need to estimate effective transcriptome size before sequencing?
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Need Help with RNA secondary structure folding

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1352 users visited in the last hour