User: lakshmi.bioinformatics
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Posts by lakshmi.bioinformatics
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... @Emily can you pls suggest if the two or more ensembl ids (ultimately also their sequences ) can be used interchangably
Thanks in advance for the reply ...
written 22 days ago by
lakshmi.bioinformatics • 20
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... Thank you @Jean-Karim Heriche
My data is from online databases and its not an experimental one thanks again for the information.
How to extract only the human Ids from Negatome ...
written 9 weeks ago by
lakshmi.bioinformatics • 20
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... I am working on human protein protein interaction I need to run SVM I need a negative data set comprising of non interacting protein pairs how to generate these.
I found this database Negatome (http://mips.helmholtz-muenchen.de/proj/ppi/negatome/) but the the problem is it talking about most mamma ...
written 9 weeks ago by
lakshmi.bioinformatics • 20
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... thank you @ cpad0112 ...
written 9 weeks ago by
lakshmi.bioinformatics • 20
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... Thank you for pointing it out @h.mon I shall avoid these kind of statements in future ...
written 9 weeks ago by
lakshmi.bioinformatics • 20
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... sorry @h.mon I was not trying to be rude since I was asked to explain my question I was doing it since I guessed the term N is well known I mentioned it in this fashion.
Sorry if I ment to be hurting someone ...
written 9 weeks ago by
lakshmi.bioinformatics • 20
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... Yes the sequence is in fasta format and how to mask with biopython also I need to draw a CGR how can it be done with biopython ...
written 10 weeks ago by
lakshmi.bioinformatics • 20
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... I need to prepare a chaos game representation(CGR) model for around 30k gene sequences in the gene sequences there are lot of places marked with Ns(hope you know what are Ns) this is the work my doubt is can I prepare CGR using Biopython if yes how to deal with the Ns in the sequences ...
written 10 weeks ago by
lakshmi.bioinformatics • 20
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... I have a bunch of gene sequences for which I need to draw the chaos game representation model how can I do this using Biopython also I have Ns in the sequence how to mask them ...
written 10 weeks ago by
lakshmi.bioinformatics • 20
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... How to mask using Python program ...
written 10 weeks ago by
lakshmi.bioinformatics • 20
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