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User: lakshmi.bioinformatics

gravatar for lakshmi.bioinformatics
Reputation:
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Location:
India
Last seen:
1 month, 3 weeks ago
Joined:
3 years, 3 months ago
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l*********************@gmail.com

Posts by lakshmi.bioinformatics

<prev • 23 results • page 1 of 3 • next >
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Comment: C: Why am I getting different ensembl gene ids for a given gene symbol?
... @Emily can you pls suggest if the two or more ensembl ids (ultimately also their sequences ) can be used interchangably Thanks in advance for the reply ...
written 11 weeks ago by lakshmi.bioinformatics • 20
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Answer: A: How to get non-interacting protein pairs in Human
... Thank you @Jean-Karim Heriche My data is from online databases and its not an experimental one thanks again for the information. How to extract only the human Ids from Negatome ...
written 4 months ago by lakshmi.bioinformatics • 20
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How to get non-interacting protein pairs in Human
... I am working on human protein protein interaction I need to run SVM I need a negative data set comprising of non interacting protein pairs how to generate these. I found this database Negatome (http://mips.helmholtz-muenchen.de/proj/ppi/negatome/) but the the problem is it talking about most mamma ...
protein negatome protein-protein interaction written 4 months ago by lakshmi.bioinformatics • 20
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Comment: C: Chaos game representation application using Biopython
... thank you @ cpad0112 ...
written 4 months ago by lakshmi.bioinformatics • 20
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Comment: C: Chaos game representation application using Biopython
... Thank you for pointing it out @h.mon I shall avoid these kind of statements in future ...
written 4 months ago by lakshmi.bioinformatics • 20
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Comment: C: Chaos game representation application using Biopython
... sorry @h.mon I was not trying to be rude since I was asked to explain my question I was doing it since I guessed the term N is well known I mentioned it in this fashion. Sorry if I ment to be hurting someone ...
written 4 months ago by lakshmi.bioinformatics • 20
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Comment: C: How to deal with the Ns in gene sequences?
... Yes the sequence is in fasta format and how to mask with biopython also I need to draw a CGR how can it be done with biopython ...
written 4 months ago by lakshmi.bioinformatics • 20
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Comment: C: Chaos game representation application using Biopython
... I need to prepare a chaos game representation(CGR) model for around 30k gene sequences in the gene sequences there are lot of places marked with Ns(hope you know what are Ns) this is the work my doubt is can I prepare CGR using Biopython if yes how to deal with the Ns in the sequences ...
written 4 months ago by lakshmi.bioinformatics • 20
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Chaos game representation application using Biopython
... I have a bunch of gene sequences for which I need to draw the chaos game representation model how can I do this using Biopython also I have Ns in the sequence how to mask them ...
gene chaos game representation biopython written 4 months ago by lakshmi.bioinformatics • 20
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Comment: C: How to deal with the Ns in gene sequences?
... How to mask using Python program ...
written 4 months ago by lakshmi.bioinformatics • 20

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