User: claire.lemaitre
claire.lemaitre • 100
- Reputation:
- 100
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- France
- Last seen:
- 3 months ago
- Joined:
- 4 years, 2 months ago
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Posts by claire.lemaitre
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4
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Tool:
MindTheGap new release !
... Dear MindTheGap enthusiasts,
## What is MindTheGap ?
MindTheGap performs detection and assembly of DNA insertion variants in NGS read datasets with respect to a reference genome. It is designed to call insertions of any size, whether they are novel or duplicated, homozygous or heterozygous in the ...
written 2.2 years ago by
claire.lemaitre • 100
2
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... Hi,
TakeABreak can use paired-end and mate pair reads as well as single-end ones, it just does not use the pairing or mating information.
You can indicate in the input that some fastq files come from the same sample, using files of files (fof).
For instance, if you have three samples, each repres ...
written 2.2 years ago by
claire.lemaitre • 100
2
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Comment:
C: DiscoSnp++ 2.2.0 release
... Hi Rayan,
We performed some tests to assess the robustness of the automatic threshold detection method, but not in all situations (data type, read-depth and kmer-size), in fact mainly in classical situations.
The automatic threshold detection is pretty robust for whole genome sequencing data with ...
written 3.2 years ago by
claire.lemaitre • 100
2
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... Hi,
This is an error in the documentation, currently Bloocoo is not able to deal with more than one file. In fact, this is only the writing of the output that is not handled, so this is probably easy to implement, and this should be done soon.
Claire
...
written 3.7 years ago by
claire.lemaitre • 100
Latest awards to claire.lemaitre
Scholar
3.7 years ago,
created an answer that has been accepted.
For A: Bloocoo failed on two input files.
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