User: claire.lemaitre

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Posts by claire.lemaitre

<prev • 7 results • page 1 of 1 • next >
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Comment: C: HDF5-DIAG: Error in using dsk
... Yes it worked with the following txt file for instance : A_R1 AR2 with the first file being in fastq format and the second in fasta, both without any extension in my current directory. ...
written 11 days ago by claire.lemaitre120
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Comment: C: HDF5-DIAG: Error in using dsk
... DSK does not require any specific extension. It worked for me with files without the .fastq or .fasta extension, and DSK recognizes the format from the content of the file. ...
written 11 days ago by claire.lemaitre120
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Answer: A: HDF5-DIAG: Error in using dsk
... Hi, The file extension should not be a problem, as long as it is the same in the file and in the input txt file (ie if your file name ends with .fastq, it must be named also with .fastq in the input txt file). Did you generate your txt file on windows ? If so, you can try to reformat it in unix fo ...
written 12 days ago by claire.lemaitre120
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Tool: MindTheGap new release !
... Dear MindTheGap enthusiasts, ## What is MindTheGap ? MindTheGap performs detection and assembly of DNA insertion variants in NGS read datasets with respect to a reference genome. It is designed to call insertions of any size, whether they are novel or duplicated, homozygous or heterozygous in the ...
mindthegap gatb tool written 4.7 years ago by claire.lemaitre120
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Answer: A: Illumina mate-pair reads with TakeABreak
... Hi, TakeABreak can use paired-end and mate pair reads as well as single-end ones, it just does not use the pairing or mating information. You can indicate in the input that some fastq files come from the same sample, using files of files (fof). For instance, if you have three samples, each repres ...
written 4.7 years ago by claire.lemaitre120
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Comment: C: DiscoSnp++ 2.2.0 release
... Hi Rayan, We performed some tests to assess the robustness of the automatic threshold detection method, but not in all situations (data type, read-depth and kmer-size), in fact mainly in classical situations. The automatic threshold detection is pretty robust for whole genome sequencing data with ...
written 5.6 years ago by claire.lemaitre120
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Answer: A: Bloocoo failed on two input files.
... Hi, This is an error in the documentation, currently Bloocoo is not able to deal with more than one file. In fact, this is only the writing of the output that is not handled, so this is probably easy to implement, and this should be done soon. Claire ...
written 6.1 years ago by claire.lemaitre120

Latest awards to claire.lemaitre

Popular Question 2.7 years ago, created a question with more than 1,000 views. For MindTheGap new release !
Scholar 6.1 years ago, created an answer that has been accepted. For A: Bloocoo failed on two input files.

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