User: Neu

gravatar for Neu
Neu10
Reputation:
10
Status:
New User
Location:
India
Last seen:
5 months, 2 weeks ago
Joined:
3 years, 11 months ago
Email:
m*****************@gmail.com

Posts by Neu

<prev • 15 results • page 1 of 2 • next >
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How to get binary data from gene set data?
... Hi, I want to melt a geneset data to get binary interactions. How can I get this? I have mentioned below the input and output. Thank you, Input: AANWWTGC_UNKNOWN 4208 481 6095 AAAYRNCTG_UNKNOWN 4052 9842 23047 AAAYWAACM_HFH4_01 4208 161753 3151 Output: AANWWTGC_UNKNOWN ...
R rna-seq written 5 months ago by Neu10 • updated 5 months ago by Kevin Blighe21k
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NONCODE transcript id conversion
... Hi, Where can I get all the NOCODE gene/transcript ids and their corresponding ensemble gene/transcript ids? Thank you ...
assembly rna-seq written 5 months ago by Neu10 • updated 5 months ago by genomax49k
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lncRNA-mRNA binding prediction database?
... Hello, Is there any database for predicted lncRNA-mRNA binding pairs? Thank you ...
next-gen rna-seq sequencing written 5 months ago by Neu10 • updated 5 months ago by Kevin Blighe21k
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construction of gene co-expression network based on CPM values
... Hi, Will it be correct to generate gene co-expression network from count per million (CPM) values? ...
next-gen rna-seq written 6 months ago by Neu10 • updated 6 months ago by Kevin Blighe21k
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Rgarding Methyl-seq peak annotation
... Hi, I have some query regarding Methyl-seq peak annotation. I have Methy-seq peaks in bed file. I have genome annotation file (.gtf). Is it possible to obtain genes having Methyl peaks 10kb upstream or down stream of their TSSs? I do not want the GO annotation. Kindly help me. ...
genome R next-gen chip-seq written 13 months ago by Neu10
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TF-cromatin remodeling factor -gene FFL
... Hi, If I predict feed forward loop considering TF, chromatin remolding factor and common gene, will it be a significant study? ...
systems biology rna-seq written 14 months ago by Neu10
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Answer: A: Integrative analysis of RNA-seq and DNA-methylation study refering different ann
... Thank you. It helped ...
written 15 months ago by Neu10
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Integrative analysis of RNA-seq and DNA-methylation study refering different annotation files
... Hi, I have analyzed RNA-seq data where I used GENCODE v 25 annotation. I want to integrate this data with DNA -methylation study that refers hg19 build for alignment. Will it cause any problem? Thank You ...
methyl-seq rrbs rna-seq written 15 months ago by Neu10
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Query regarding co-expressed and co-regulated genes
... Hi, Analyzing RNA-seq data I have obtained co-expressing gene pairs. Further from ChIPBase, I found some genes have regulatory domain near TSS of their co-expressing partners. So can I consider these pairs as co-expressing and co-regulating gene pair? Will it be significant? ...
genome next-gen rna-seq written 16 months ago by Neu10
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Comment: C: conversion of co-expression matrix in to vector using R
... Thank you. I used melt() function of reshape and got the result. ...
written 17 months ago by Neu10

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