User: amarin.cogburn

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Posts by amarin.cogburn

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Comment: C: How to determine appropriate value for abundance parameter?
... Thanks for the clarification ...
written 3.0 years ago by amarin.cogburn0
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Comment: C: How to determine appropriate value for abundance parameter?
... Would that be the coverage cut-off metric? Thanks for the quick reply. ...
written 3.0 years ago by amarin.cogburn0
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How to determine appropriate value for abundance parameter?
... Up to this point I've mostly used the default 3.  How would one go about determining what the optimal abundance threshold is for a given dataset.  I realize that kmer size selection has the greater effect on assembly quality and I've used kmergenie effectively for this on bacterial isolates in the p ...
minia written 3.0 years ago by amarin.cogburn0 • updated 3.0 years ago by Rayan Chikhi1.2k

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