User: Jennifer Hillman Jackson

Reputation:
360
Status:
Trusted
Location:
Bay Area, CA
Website:
http://linkedin.com/in...
Last seen:
2 months, 1 week ago
Joined:
7 years, 10 months ago
Email:
j**@galaxyproject.org

Jennifer Hillman Jackson
Application Support at Galaxy Project
http://galaxyproject.org
http://usegalaxy.org
http://biostar.usegalaxy.org
https://vimeo.com/galaxyproject

Posts by Jennifer Hillman Jackson

<prev • 23 results • page 1 of 3 • next >
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Answer: A: Nextera pair end adapter cleaning
... Cross-posted: https://biostar.usegalaxy.org/p/29594/ ...
written 10 weeks ago by Jennifer Hillman Jackson360
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Answer: A: Galaxy tutorial on rnaseq
... Hello, There are many RNA-seq Galaxy tutorials, these are the most current: https://galaxyproject.org/learn/ Thanks! Jen, Galaxy team ...
written 6 months ago by Jennifer Hillman Jackson360
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Answer: A: Star-Fusion last-matching gene pairs file
... Cross-posted and answered here: https://biostar.usegalaxy.org/p/27607 ...
written 8 months ago by Jennifer Hillman Jackson360
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Answer: A: Trinity RnaSeq Protocol Galaxy plateform
... Hello, Please see the reply here: https://biostar.usegalaxy.org/p/25720/ Thanks! Jen, Galaxy team ...
written 12 months ago by Jennifer Hillman Jackson360
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Answer: A: Empty VCF file returned by ANNOVAR on Galaxy
... Reply https://biostar.usegalaxy.org/p/18107/ ...
written 2.5 years ago by Jennifer Hillman Jackson360
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Comment: C: How to calculate average coverage for all genes
... Try **NGS: RNA Analysis > htseq-count**. The SAMtools and BEDtool items mentioned in this thread area also wrapped for Galaxy. ...
written 2.5 years ago by Jennifer Hillman Jackson360
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Answer: A: Galaxy vs Linux Command Line
... Hello, Galaxy will do all of these items as built-in functionality whereas in a custom line-command workflow each would need to be engineered in. Galaxy includes API access for high-through-put analysis (working through the web interface is not the only method). [BioBlend][1] is a popular choice f ...
written 2.6 years ago by Jennifer Hillman Jackson360
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Answer: A: Screening whole genome sequence data for mutations in regulatory regions of gene
... Hello, I didn't find a post at Galaxy Biostars, but this tutorial should help you to learn about variant calling and downstream annotation in Galaxy. Modify the example tutorial to create a workflow that meets your specific analysis goals. https://github.com/nekrut/galaxy/wiki/Diploid-variant-call ...
written 2.6 years ago by Jennifer Hillman Jackson360
1
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Answer: A: problem with using CuffMerge in Galaxy
... Thanks Devon! For any interested, follow the post here: https://biostar.usegalaxy.org/p/17618/ Jen, Galaxy team ...
written 2.6 years ago by Jennifer Hillman Jackson360
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Answer: A: Galaxy local installation - download reference genomes
... A reply for most of this question is at Galaxy Biostars: https://biostar.usegalaxy.org/p/16334 That reply does not address why the job is running for so long. hg19 as contained at the Galaxy Rsync server is not appropriate for GATK. Use hg_g1k_v37 instead. Where data managers are placing data is c ...
written 2.8 years ago by Jennifer Hillman Jackson360

Latest awards to Jennifer Hillman Jackson

Scholar 10 weeks ago, created an answer that has been accepted. For A: How to use my own genome on UCSC browser?
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: How To Know When A Ucsc Annotation Track Has Been Updated
Supporter 2.5 years ago, voted at least 25 times.
Scholar 2.6 years ago, created an answer that has been accepted. For A: How to use my own genome on UCSC browser?
Scholar 3.7 years ago, created an answer that has been accepted. For A: How to use my own genome on UCSC browser?
Appreciated 5.1 years ago, created a post with more than 5 votes. For A: How To Know When A Ucsc Annotation Track Has Been Updated
Good Answer 5.1 years ago, created an answer that was upvoted at least 5 times. For A: How To Know When A Ucsc Annotation Track Has Been Updated
Teacher 5.1 years ago, created an answer with at least 3 up-votes. For A: How To Know When A Ucsc Annotation Track Has Been Updated
Teacher 5.1 years ago, created an answer with at least 3 up-votes. For A: How Do I Get The Gene Names From The Chromosome Locations In A Wig File
Autobiographer 5.1 years ago, has more than 80 characters in the information field of the user's profile.

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