User: Dataman

gravatar for Dataman
Dataman240
Reputation:
240
Status:
Trusted
Location:
Finland
Last seen:
11 hours ago
Joined:
3 years, 3 months ago
Email:
b******************@yahoo.com

Bioinfotmatics Master's student!

Posts by Dataman

<prev • 57 results • page 1 of 6 • next >
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Comment: C: demultiplexing Illumina output with fastq_multx
... Sure, I will let you know! However, it seems that I am also going to use the MiSeq Reporter for de-multiplexing even though I have not had time to figure it out how. I assume that I should make a sample sheet file and in the sample sheet I should set the workflow to be 'de-multiplexing' or something ...
written 1 day ago by Dataman240
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Comment: C: demultiplexing Illumina output with fastq_multx
... Were you able to solve your problem? How did you do it? ...
written 8 days ago by Dataman240
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Comment: C: Calculating GC content from BAM file by BED file
... I am wondering why the GC content is calculated here for a BAM file and not for example from reference genome. Does this imply that if one has 100 samples, she has to calculate the GC content for each sample separately? ...
written 6 months ago by Dataman240
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Comment: C: Bioinformatics courses, workshops or training
... Hi Deepak! I was replying to Carlo's post and not your list! ...
written 6 months ago by Dataman240
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Comment: C: Bioinformatics courses, workshops or training
... It seems that some of the courses in the provided link are not FREE! These days people can find very many quality options from best universities all over the world for FREE. ...
written 6 months ago by Dataman240
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Comment: C: Subsampling Bam File With Samtools
... You could accept one of the answers as the final answer. ...
written 8 months ago by Dataman240
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Comment: C: What is difference between soft-clipped and hard-clipped in SAM specification?
... @Calvin: This might answer your question: https://www.biostars.org/p/109333/ ...
written 9 months ago by Dataman240
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Comment: C: Understanding up and down regulated genes from LOG2 foldchange or foldchange
... +1 for providing the link to the review article! :) ...
written 12 months ago by Dataman240
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Comment: C: How To Sort Bed Format File
... what kind of side effect? ...
written 12 months ago by Dataman240
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Comment: C: How To Compute Gene Enrichment P-Value? (Significantly More Than Expected)
... @Damian: I was wondering why you are subtracting `1` from `arg[4]` when you are calculating the `survival function`. The same type of question can be asked for adding `1` to `arg[4]` when calculating the `CDF`? Is it because we are working with discrete values and to include the instance `X=x` in th ...
written 14 months ago by Dataman240

Latest awards to Dataman

Great Question 3 months ago, created a question with more than 5,000 views. For samtools bedcov vs. bedtools coverage
Popular Question 5 months ago, created a question with more than 1,000 views. For What is the best way to make a bam file smaller by removing unwanted information?
Popular Question 11 months ago, created a question with more than 1,000 views. For Does one need to sort and index after performing a rmdup in Samtools?
Popular Question 14 months ago, created a question with more than 1,000 views. For Breaking down the reference genome chromosome-wise
Popular Question 15 months ago, created a question with more than 1,000 views. For Breaking down the reference genome chromosome-wise
Good Question 16 months ago, asked a question that was upvoted at least 5 times. For samtools bedcov vs. bedtools coverage
Appreciated 16 months ago, created a post with more than 5 votes. For samtools bedcov vs. bedtools coverage
Student 16 months ago, asked a question with at least 3 up-votes. For samtools bedcov vs. bedtools coverage
Voter 2.2 years ago, voted more than 100 times.
Supporter 3.2 years ago, voted at least 25 times.

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