User: Dataman

gravatar for Dataman
Dataman260
Reputation:
260
Status:
Trusted
Location:
Finland
Last seen:
1 week, 3 days ago
Joined:
5 years ago
Email:
b******************@yahoo.com

Bioinfotmatics Master's student!

Posts by Dataman

<prev • 62 results • page 1 of 7 • next >
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Comment: C: Quality Control Software For Targeted Sequencing?
... Also in the latest versions of `Picard` there is a command that helps one to make such intervals from `Bed` files. They are: `picard BedToIntervalList`. This command requires a sequence dictionary that can be made using: `picard CreateSequenceDictionary`. ...
written 5 months ago by Dataman260
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Comment: C: Quality Control Software For Targeted Sequencing?
... The link above is broken. Here is a currently unbroken link to `CollectTargetedPcrMetrics`: https://software.broadinstitute.org/gatk/documentation/tooldocs/4.0.5.0/picard_analysis_directed_CollectTargetedPcrMetrics.php ...
written 5 months ago by Dataman260
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Comment: C: What Makes One Probability Distribution Better For Rna-Seq Than Another?
... the link was broken. Here is the link: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0016327 Look for figure 1. ...
written 13 months ago by Dataman260
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Comment: C: Why Is Snp Data Generally Restricted?
... Maybe this article be helpful for your latter question: http://science.sciencemag.org/content/305/5681/183 ...
written 19 months ago by Dataman260
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Comment: C: Forward And Reverse Strand Conventions
... > For 50% of genes, its coding strand will correspond to the chromosome's forward strand, and for the other 50% it will correspond to the reverse strand. Would you please elaborate where these numbers are coming from? And why exactly 50-50%? Thanks! ...
written 19 months ago by Dataman260
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Comment: C: demultiplexing Illumina output with fastq_multx
... Sure, I will let you know! However, it seems that I am also going to use the MiSeq Reporter for de-multiplexing even though I have not had time to figure it out how. I assume that I should make a sample sheet file and in the sample sheet I should set the workflow to be 'de-multiplexing' or something ...
written 21 months ago by Dataman260
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Comment: C: demultiplexing Illumina output with fastq_multx
... Were you able to solve your problem? How did you do it? ...
written 21 months ago by Dataman260
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Comment: C: Calculating GC content from BAM file by BED file
... I am wondering why the GC content is calculated here for a BAM file and not for example from reference genome. Does this imply that if one has 100 samples, she has to calculate the GC content for each sample separately? ...
written 2.2 years ago by Dataman260
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Comment: C: Bioinformatics courses, workshops or training
... Hi Deepak! I was replying to Carlo's post and not your list! ...
written 2.3 years ago by Dataman260
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Comment: C: Bioinformatics courses, workshops or training
... It seems that some of the courses in the provided link are not FREE! These days people can find very many quality options from best universities all over the world for FREE. ...
written 2.3 years ago by Dataman260

Latest awards to Dataman

Popular Question 29 days ago, created a question with more than 1,000 views. For what does Num_Probes in a segmentation file refer to?
Popular Question 11 months ago, created a question with more than 1,000 views. For what does Num_Probes in a segmentation file refer to?
Epic Question 12 months ago, created a question with more than 10,000 views. For samtools bedcov vs. bedtools coverage
Popular Question 16 months ago, created a question with more than 1,000 views. For what does Num_Probes in a segmentation file refer to?
Great Question 2.0 years ago, created a question with more than 5,000 views. For samtools bedcov vs. bedtools coverage
Popular Question 2.2 years ago, created a question with more than 1,000 views. For What is the best way to make a bam file smaller by removing unwanted information?
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Does one need to sort and index after performing a rmdup in Samtools?
Popular Question 2.9 years ago, created a question with more than 1,000 views. For Breaking down the reference genome chromosome-wise
Popular Question 3.0 years ago, created a question with more than 1,000 views. For Breaking down the reference genome chromosome-wise
Good Question 3.1 years ago, asked a question that was upvoted at least 5 times. For samtools bedcov vs. bedtools coverage
Appreciated 3.1 years ago, created a post with more than 5 votes. For samtools bedcov vs. bedtools coverage
Student 3.1 years ago, asked a question with at least 3 up-votes. For samtools bedcov vs. bedtools coverage
Voter 4.0 years ago, voted more than 100 times.
Supporter 4.9 years ago, voted at least 25 times.

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