User: The Last Word

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The Last Word150
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India
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6 days, 2 hours ago
Joined:
3 years, 9 months ago
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Posts by The Last Word

<prev • 57 results • page 1 of 6 • next >
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Analyze network clusters with not much biological information
... I have a set of eight clusters from a larger gene regulatory network consisting of transcription factors and the genes they regulate (bipartite network). The problem is that most of the genes in all those clusters are uncharacterized genes. I am hence not able to derive much biological information f ...
network written 6 days ago by The Last Word150
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Checking the degree Distribution of a network after clustering
... Hi, I had a real world gene network (with scale free distribution) that I clustered into eight parts. I further checked the degree distribution of these eight clusters to check if it conformed to a power law distribution. I have an advisory committee and one of my committee members ended up asking ...
degree distribution cytoscape written 28 days ago by The Last Word150
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(Closed) Is DAVID working
... Hi, I have been trying to access [DAVID][1] for an ontology analysis for quite sometime without success. Is the website down for some reason? [1]: https://david.ncifcrf.gov/ ...
david written 6 weeks ago by The Last Word150
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Comment: C: Ideas for more analysis
... @Sean Davis That is what I was wondering myself. Other than compare GO terms to check biological similarity or dissimilarity, is there any other biological question I could investigate through a comparison of the gene networks of two orthologous species. ...
written 8 weeks ago by The Last Word150
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Ideas for more analysis
... Hi all, I have a network that I split into 8 clusters using a clustering algorithm. I further calculated the hub genes and the network parameters of these clusters.I further used DAVID to go a Gene Ontology analysis of these 8 clusters. I found the orthogonal genes in Drosophila of the genes in ea ...
cytoscape gene network written 8 weeks ago by The Last Word150 • updated 8 weeks ago by xanderpico110
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Comment: C: ClustVis error: too many open devices
... its an error from their end. They have to fix it. ...
written 3 months ago by The Last Word150
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Biological significance of network parameters
... I have a set of gene network clusters created from a bigger GRN through a clustering algorithm. I have different whole network parameters like the diameter of the different clusters, network centralization value, network heterogeneity value, network density etc. Can somebody give me some idea as to ...
network written 3 months ago by The Last Word150
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Comment: C: Compare two networks from two different species
... do you have any publications which I could read to get an idea about how you did this analysis? ...
written 4 months ago by The Last Word150
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Comment: C: Display the results obtained from DAVID and g:profiler functional annotation to
... Thank you for your valuable suggestions. ...
written 4 months ago by The Last Word150
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Display the results obtained from DAVID and g:profiler functional annotation tools
... Hi, I have used both [DAVID][1] and [g:profiler][2] to do functional annotation and pathway analysis of a set of genes that I have. Now, you might call this redundant because both effectively does the same thing, but I am doing this to validate my results using two different tools. However, I do n ...
g:profiler david functional annotation written 4 months ago by The Last Word150

Latest awards to The Last Word

Popular Question 6 weeks ago, created a question with more than 1,000 views. For Obtaining WoLFPSORT and PSORT II
Popular Question 8 weeks ago, created a question with more than 1,000 views. For Obtaining WoLFPSORT and PSORT II
Popular Question 3 months ago, created a question with more than 1,000 views. For Obtaining WoLFPSORT and PSORT II
Scholar 4 months ago, created an answer that has been accepted. For A: Error on using BEAST
Supporter 4 months ago, voted at least 25 times.
Popular Question 9 months ago, created a question with more than 1,000 views. For Structure prediction on DNA folding form or RNA folding form
Great Question 14 months ago, created a question with more than 5,000 views. For PAML input file format
Popular Question 14 months ago, created a question with more than 1,000 views. For Structure prediction on DNA folding form or RNA folding form
Student 14 months ago, asked a question with at least 3 up-votes. For RepeatMasker library out of date.
Popular Question 21 months ago, created a question with more than 1,000 views. For Error on using BEAST
Popular Question 21 months ago, created a question with more than 1,000 views. For PAML input file format
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Error on using BEAST
Popular Question 2.6 years ago, created a question with more than 1,000 views. For ncRNA Vs miRNA
Popular Question 2.6 years ago, created a question with more than 1,000 views. For PAML input file format
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Scholar 3.0 years ago, created an answer that has been accepted. For A: Error on using BEAST

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