User: The Last Word

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The Last Word140
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140
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India
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3 days, 10 hours ago
Joined:
3 years, 6 months ago
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Posts by The Last Word

<prev • 52 results • page 1 of 6 • next >
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Comment: C: ClustVis error: too many open devices
... its an error from their end. They have to fix it. ...
written 3 days ago by The Last Word140
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Biological significance of network parameters
... I am currently working on networks and I have calculated various parameters for the network like diameter, average path length, average eccentricity, radiality etc. Could someone guide me to some articles I could read as to what biological significance these parameters hold with regard to a biologic ...
bipartite network written 25 days ago by The Last Word140
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Comment: C: Compare two networks from two different species
... do you have any publications which I could read to get an idea about how you did this analysis? ...
written 27 days ago by The Last Word140
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Comment: C: Display the results obtained from DAVID and g:profiler functional annotation to
... Thank you for your valuable suggestions. ...
written 29 days ago by The Last Word140
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Display the results obtained from DAVID and g:profiler functional annotation tools
... Hi, I have used both [DAVID][1] and [g:profiler][2] to do functional annotation and pathway analysis of a set of genes that I have. Now, you might call this redundant because both effectively does the same thing, but I am doing this to validate my results using two different tools. However, I do n ...
g:profiler david functional annotation written 29 days ago by The Last Word140
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Answer: A: Get gene ids from probe ids (my idea is right or wrong)
... So, basically, since there could be a number of hits for a sequence potentially leading to unwanted results, I found a list mapping the probes with their ENTREZ ids and used that for Analysis on DAVID. If you have no option other than using sequences of probes, I would suggest using MEGABLAST to min ...
written 29 days ago by The Last Word140
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Comment: C: Help with perl script to subset a fasta file?
... Have you started working on this script on your own? You might find better advice for scripting on stack exchange. ...
written 4 weeks ago by The Last Word140
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Compare two networks from two different species
... Hi, I have a honey bee Gene Regulatory network [found here][1] and Flynet contains the [whole fly network][2]. There are also tissue specific networks present in the list for flies. I am thinking of taking the head tissue network for fly and comparing it with the brain tissue network available from ...
networks written 4 weeks ago by The Last Word140
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Comment: C: Functional analysis of my Gene regulatory network
... Thank you Kevin. I did a DAVID analysis setting the parameter as Refseq_mRNA. Eventhough the matches are very few (out of a list of 360, only 123 of them gave some kind of functional annotation result on DAVID), I guess that will have to do. if you know of other functional annotation tools that woul ...
written 4 weeks ago by The Last Word140
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Comment: C: Functional analysis of my Gene regulatory network
... Tried but DAVID gives the error "You are either not sure which identifier type your list contains, or less than 80% of your list has mapped to your chosen identifier type." Gave the id option as Refseq_mRNA and also tried with the option ENTREZ_ID ...
written 4 weeks ago by The Last Word140

Latest awards to The Last Word

Scholar 28 days ago, created an answer that has been accepted. For A: Error on using BEAST
Supporter 28 days ago, voted at least 25 times.
Popular Question 6 months ago, created a question with more than 1,000 views. For Structure prediction on DNA folding form or RNA folding form
Great Question 11 months ago, created a question with more than 5,000 views. For PAML input file format
Popular Question 11 months ago, created a question with more than 1,000 views. For Structure prediction on DNA folding form or RNA folding form
Student 11 months ago, asked a question with at least 3 up-votes. For RepeatMasker library out of date.
Popular Question 18 months ago, created a question with more than 1,000 views. For Error on using BEAST
Popular Question 18 months ago, created a question with more than 1,000 views. For PAML input file format
Popular Question 22 months ago, created a question with more than 1,000 views. For Error on using BEAST
Popular Question 2.3 years ago, created a question with more than 1,000 views. For ncRNA Vs miRNA
Popular Question 2.3 years ago, created a question with more than 1,000 views. For PAML input file format
Popular Question 2.6 years ago, created a question with more than 1,000 views. For PAML input file format
Scholar 2.8 years ago, created an answer that has been accepted. For A: Error on using BEAST

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