User: Devonj

gravatar for Devonj
Devonj90
Reputation:
90
Status:
New User
Location:
Berkeley, CA
Website:
http://www.enlis.com
Last seen:
5 years, 2 months ago
Joined:
8 years, 4 months ago
Email:
d*******@yahoo.com

Posts by Devonj

<prev • 9 results • page 1 of 1 • next >
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Comment: C: Up To Date Allele Frequency Data - Larger Datasets?
... Thanks for the links but these are relatively unsatisfying. Was hoping for NGS based exome or whole genome data - perhaps I should have specified. ...
written 5.3 years ago by Devonj90
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Up To Date Allele Frequency Data - Larger Datasets?
... We are currently using 1000 genomes phase 1 and NHLBI Exome Sequencing Project data ( http://evs.gs.washington.edu/EVS/ ) data to determine variant allele frequency. Both of these are getting relatively old (in genomics terms) I'm wondering if there are any larger datasets out there yet? ...
frequency allele written 5.3 years ago by Devonj90 • updated 5.3 years ago by xb400
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Tool: Drag-And-Drop Vcfsplit Tool
... I know many here are command-line proficient, but for those that may not be, we released a free drag-and-drop tool to split a multi-sample VCF into individual VCF files. http://www.enlis.com/tools.html ...
vcf tools tool written 5.6 years ago by Devonj90 • updated 5.5 years ago by alexej.knaus120
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Answer: A: Visualization Tools For Ngs Analysis Results, Suitable For Biologists
... If you are willing to try commercial software - our Enlis Genome Research package was designed with "wet lab" people in mind. ( http://www.enlis.com/research_edition.html ) ...
written 5.7 years ago by Devonj90
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Answer: A: How To Resolve The Gene To Mrnas Relationships For The Human Genome?
... At our company, we were encountering many of the same issues, so we recently switched from UCSC data to the NCBI data found here: ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapiens/GFF/ref_GRCh37.p10_top_level.gff3.gz Or there is more recently updated file here: ftp://ftp.ncbi.nlm.nih.gov/genomes/H_sapie ...
written 6.0 years ago by Devonj90
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Comment: C: Software Suggestions Needed To Efficiently Deal With Ngs Variants
... @JorgeAmigo Yep we do want to add more filters, to allow finer control. If anyone has recommendation of filters they would find especially useful, we would be happy to prioritize those. @mdeng Glad you like it! Yes there is a mailing list signup in the bottom right corner of the homepage: http:/ ...
written 7.9 years ago by Devonj90
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Answer: A: Software Suggestions Needed To Efficiently Deal With Ngs Variants
... Hi Jorge, We are working on something that you can hand to non-bfx experts: http://www.enlis.com/research_edition.html It isn't quite ready to release yet -- (we are working on being able to import data from different sources like SOLiD) Let me know if you have any questions ...
written 7.9 years ago by Devonj90
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Comment: C: Get Snp Position From Name With Web Service (Ncbi 36 And 37)
... Errr... not precisely as far as I can tell. The linked question suggest Biomart - but it doesn't seem that biomart supports NCBI36 (I would be happy to be shown incorrect) I was hoping for a RESTful service that could give results for a SNP position from both NCBI36 and NCBI37 ...
written 8.3 years ago by Devonj90
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(Closed) Get Snp Position From Name With Web Service (Ncbi 36 And 37)
... Are there any GET/POST web services for getting the chromosome position of a named SNP? i.e. send "rs2886331" - need to get back Chr1 201100526 I've tried EUtils http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=snp&id=2886331&report=XML But it only returns results for NCBI buil ...
position snp written 8.3 years ago by Devonj90 • updated 8.3 years ago by Pierre Lindenbaum120k

Latest awards to Devonj

Student 5.3 years ago, asked a question with at least 3 up-votes. For Up To Date Allele Frequency Data - Larger Datasets?
Popular Question 8.3 years ago, created a question with more than 1,000 views. For Get Snp Position From Name With Web Service (Ncbi 36 And 37)

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