User: Sunflow

gravatar for Sunflow
Sunflow30
Reputation:
30
Status:
New User
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Last seen:
7 years, 10 months ago
Joined:
8 years, 8 months ago
Email:
c*********@yahoo.com.tw

Posts by Sunflow

<prev • 3 results • page 1 of 1 • next >
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Where To Get The Adaptor Sequence And Mapping Reads With Bowtie
... Hello all, I downloaded the .sra file(SRR052645.sra)(http://www.ncbi.nlm.nih.gov/sra?term=SRR052645) from NCBI SRA, and I want to mapping these reads to the Arabidopsis genome by bowtie, but I'm not sure whether the procedures of data processing is right... the following statement is what I do: 1. D ...
sra adaptor bowtie written 7.9 years ago by Sunflow30 • updated 7.9 years ago by ALchEmiXt1.9k
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What Is Moving Average(Ma) In Chip-Chip Data?
... I have read the paper published on the plant journal"A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana",there is a tool "CisGenome" used for ChIP-chip data analysis with the option "MA(moving average)" to find the probable tr ...
binding chip-seq transcription written 8.6 years ago by Sunflow30 • updated 8.6 years ago by brentp23k
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Can Toucan Tool Be Applied To Plant Genes?
... When I launched the TOUCAN v. 3.0.2, I found it accepts the Ensembl ID (start with ENSG) only, I retrieve the ensembl gene ID of Arabidopsis from here (Gramene): http://www.gramene.org/biomart/martview/56e6245bdec599856d309fbd1d902125/56e6245bdec599856d309fbd1d902125 and when I load these ensembl ...
software plant sequence written 8.7 years ago by Sunflow30 • updated 8.7 years ago by Stein Aerts30

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