User: caribsim

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caribsim0
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Posts by caribsim

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E-Value Threshold Analysis
... Hi,  I've been experimenting with various sequence search tools and been using their E-values to compare results. One concern I've had is really how appropriate this is. For example in practice would using an e-value threshold in BLAST , eg. 0.001, be comparable to using the same threshold in psi-b ...
fasta phmmer e-value psi-blast blast written 5.0 years ago by caribsim0
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Comment: C: SCOP Protein domains + order/disorder
... Thank you for the response! It makes sense that domains can of course be considered disordered and thus be used in classification strategies based maybe on function. I just thought that such domains would be left out of the SCOPe database as this database should be protein domains whose structures h ...
written 5.0 years ago by caribsim0
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SCOP Protein domains + order/disorder
... Hello, the question I wanted to ask is : are protein domains considered ordered proteins? I understand protein domains to be regions of protein sequence/structure which can fold independently from the rest of the protein and have their own functionality. What I don't understand is how exactly this ...
scop protein written 5.0 years ago by caribsim0 • updated 3.1 years ago by Biostar ♦♦ 20

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