User: jeccy.J

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jeccy.J50
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Argentina
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2 days, 1 hour ago
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5 years, 7 months ago
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Posts by jeccy.J

<prev • 65 results • page 1 of 7 • next >
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Comment: C: What Is A Typical Salary Range For Bioinformatician In Singapore
... Glassdoor generally not provide any real information. I have a doubt on it. ...
written 4 weeks ago by jeccy.J50
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How to make a single file from multiple metagphan2 merged file
... Hi there, I have multiple metaphaln2 merged output (raw file not accessible), can anyone suggest me how to make a single merged file from all the output. As the dimension of each file is different I am not able to join one after another. jj ...
metagenome written 10 weeks ago by jeccy.J50
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metaphaln2 downstream analysis
... Hi everyone, Can anyone suggest me some R package or tools which can handle the metaphlan2 and humann2 output and proceeded the downstream analysis ? Particularly I need to look taxa abundance plot and also need to do some statical analysis? JJ ...
metagenome written 3 months ago by jeccy.J50
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Rarefaction curve of Shotgun metagenome
... We have done a large scale shotgun metagenome over 100 samples and analysed using metaphlan2. Can anybody help me out how to perform a Rarefaction analysis of metaphal2 output, as i can did not see anything motioned about Rarefaction on metaphaln web page. In case of amplicon we can subsample the re ...
sequence metagenome written 4 months ago by jeccy.J50 • updated 10 weeks ago by Biostar ♦♦ 20
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Comment: C: Pangenome Analysis using Roary tool
... Could you please explain how to extract the SNPs from the final output of Roary. ...
written 8 months ago by jeccy.J50
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Comment: C: Error while importing data into Qiime2
... The file name are as below : Fan1_S26_L001_R1_001.fastq Fan7_S34_L001_R1_001.fastq Fan1_S26_L001_R2_001.fastq Fan7_S34_L001_R2_001.fastq Fan4_S31_L001_R1_001.fastq Fan9_S36_L001_R1_001.fastq Fan4_S31_L001_R2_001.fastq Fan9_S36_L001_R2_001.fastq head of one file @M02975:138:000000000-CFCFY:1 ...
written 8 months ago by jeccy.J50
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Error while importing data into Qiime2
... Hi everyone, I am trying to import fastq files (16s amplicon sequence data) into qiime2 pipeline but some error occurred. Can anyone please help me out to solve the error. $ qiime tools import --type SampleData[PairedEndSequencesWithQuality] --input-path primer_trimmed_fastqs --output-path r ...
sequence written 8 months ago by jeccy.J50 • updated 8 months ago by swbarnes27.5k
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How to do alpha and beta diversity with shougun metagenome data
... Hi Everyone, Can anyone suggest me any tools or R package for shotgun metagenome alpha and beta diversity analysis. Currently i am using kaiju for classification of all the raw reads. I have a final csv file with the taxa abundance (number of total reads) of each sample. For example : ...
metagenom shotgun written 12 months ago by jeccy.J50 • updated 10 months ago by gb1.7k
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Comment: C: How to remove contamination reads from fastq flle
... @genomax i tried as per your suggestion but could not make any improvement in reads for the negative control. Do you have any other suggestion/idea? ...
written 12 months ago by jeccy.J50
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Comment: C: How to remove contamination reads from fastq flle
... No i did not try yet. I will have a try. My guess was the reads which is coming from negative control(mainly from kit and reagents) that must be present in positive control as well. So if I remove particular those reads and the remaining will be from positive control. But i am not sure that i am ri ...
written 12 months ago by jeccy.J50

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Popular Question 24 days ago, created a question with more than 1,000 views. For Roary pan genome analysis error
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Popular Question 13 months ago, created a question with more than 1,000 views. For Roary pan genome analysis error
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