User: sara

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sara0
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5 years, 1 month ago
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5 years, 2 months ago
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m*******@gmail.com

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Posts by sara

<prev • 6 results • page 1 of 1 • next >
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Comment: C: Preview temporary outputfile blast
... You're right, it's just that it was running for a long time, and I didn't want to waste all that was already been done. I just didn't know if it would take another day or 2 or 2 months! But thanks, we all pretty much answered my question. ...
written 5.2 years ago by sara0
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Comment: C: Preview temporary outputfile blast
... See "more editing"... ...
written 5.2 years ago by sara0
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Comment: C: Preview temporary outputfile blast
... That's the main issue I believe. Blast is storing my results on the RAM. It is noticeable as RAM's usage is growing. I added the -out argument in the command line (see above). Does anybody knows how to tell blast not to store it on the RAM, but on the disk instead?   ...
written 5.2 years ago by sara0
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Comment: C: Preview temporary outputfile blast
... Thanks, I could look into that to lower the time running! Do you know of a quick way to remove, let's say... all eukaryotes? ...
written 5.2 years ago by sara0
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Comment: C: Preview temporary outputfile blast
... Thanks, but that wouldn't solve my problem. See EDITING remark on my post. ...
written 5.2 years ago by sara0
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Preview temporary outputfile blast
... Hi, Is there a way to peek at blast temporary file? I would like to know what sequence is analyzed in order to foresee how long the program will take to finish. top command shows that it uses around 4 gigs of memory, but I can't get hold of the file in the ram folders (/dev/shm). I could kill the j ...
ram blast written 5.2 years ago by sara0

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