User: Boboppie

gravatar for Boboppie
Boboppie520
Reputation:
520
Status:
New User
Location:
Cambridge, UK
Website:
http://modencode.org
Last seen:
5 years, 3 months ago
Joined:
8 years ago
Email:
f***********@gmail.com

I'm currently a bioinformatics software developer for modENCODE project in Department of Genetics, University of Cambridge.

Posts by Boboppie

<prev • 35 results • page 1 of 4 • next >
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Comment: C: Esoteric Programming Languages
... As far as I know, some biologists really like Mathematica. ...
written 7.3 years ago by Boboppie520
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Comment: C: When To Choose Python Over Perl (And Vice Versa)?
... It sometimes depends on the packages/libs available for your purpose of each language. ...
written 7.4 years ago by Boboppie520
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Answer: A: I Have An Excel File Including Some Regions And I Need The Genes Located In Each
... You can also try genomic region search on metabolicMine - http://www.metabolicmine.org/beta/genomicRegionSearch.do ...
written 7.5 years ago by Boboppie520
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Comment: C: Hidden Markov Models In Genomic Analysis
... The nbt article is a good start, and Richard's book is definitely worth reading. ...
written 7.5 years ago by Boboppie520
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Comment: C: Best Practice To Find Exon, Intron, Cds Sequences Of All Eukaryotic Species?
... @Michael Dondrup @Eric Fournier Thanks for sharing the insight :) I was concerning about the logic and feasibility to carry out such task. ...
written 7.5 years ago by Boboppie520
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Comment: C: Best Practice To Find Exon, Intron, Cds Sequences Of All Eukaryotic Species?
... @Istvan Albert thanx! ...
written 7.5 years ago by Boboppie520
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Comment: C: Best Practice To Find Exon, Intron, Cds Sequences Of All Eukaryotic Species?
... @Michael Dondrup: hi mike, my friend would like to do a multiple sequence alignment with those sequences and generate a phylogenetic tree based on exon, intron and CDS, respectively. Does it make sense? ...
written 7.5 years ago by Boboppie520
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8 follow
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Best Practice To Find Exon, Intron, Cds Sequences Of All Eukaryotic Species?
... What I can think of is to download annotation and sequence files from UCSC/Ensemble for all eukaryotic genomes, and programmatically extract the sequences. But it seems a dummy solution. Any better suggestion? ...
annotation sequence written 7.5 years ago by Boboppie520 • updated 5.2 years ago by Biostar ♦♦ 20
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Comment: C: Chromosome And Scaffold Naming Convention
... @Larry_Parnell I mean in general. ...
written 7.5 years ago by Boboppie520
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Chromosome And Scaffold Naming Convention
... I see chromosome/scaffold name/id can contain character, digit, underscore(_), dot(.), slash(/), etc. Does a convention exist? ...
scaffolding chromosome written 7.5 years ago by Boboppie520 • updated 5.7 years ago by Biostar ♦♦ 20

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