User: VineethVenumadhavan

Reputation:
30
Status:
New User
Location:
India
Last seen:
16 hours ago
Joined:
5 years, 9 months ago
Email:
v*********@gmail.com

Posts by VineethVenumadhavan

<prev • 21 results • page 1 of 3 • next >
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small RNA Workflow
... Hello World ! Looking forward a solution reagarding choosing best small RNA workflows(pre-processing->results/reports) based on following perspectives Execution Mode : Linux based, Standalone with command line mode. Not web-based. Organism : Insects Based on reviews : mimiA ...
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Comment: C: Can BBTools Dedupe be used in transcriptome assembly clustering ?
... This certainly is helping me :) ...
written 10 months ago by VineethVenumadhavan30
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Can BBTools Dedupe be used in transcriptome assembly clustering ?
... Dear Team, Curious to know if dedup(https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/dedupe-guide/) can be used for clustering transcriptome assemblies. I have to cluster my assembly with n% identity. When used dedup as follows **dedupe.sh in=assembly.fa out=Clustered_Assembly.fa ...
assembly rna-seq clustering bbtools written 10 months ago by VineethVenumadhavan30 • updated 10 months ago by Biostar ♦♦ 20
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Comment: C: Bacterial Type strain and Proxytype strain in NCBI
... Thank you microfuge :) ...
written 2.8 years ago by VineethVenumadhavan30
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Comment: C: Bacterial Type strain and Proxytype strain in NCBI
... Yes genomax. Thank you for your comment. ...
written 2.8 years ago by VineethVenumadhavan30
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Comment: A: Bacterial Type strain and Proxytype strain in NCBI
... Thank you microfuge :) ...
written 2.8 years ago by VineethVenumadhavan30
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Bacterial Type strain and Proxytype strain in NCBI
... What is the best way to Identify type strains and proxytype strains among all bacterial refseq assemblies in NCBI? Whether assembly_summary_refseq.txt in NCBI ftp [ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/assembly_summary_refseq.txt] can help in this regard? ...
genome assembly sequence written 2.8 years ago by VineethVenumadhavan30
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Comment: C: Other RNA removal from RNA-Seq Data
... Good Thought there. I appreciate. I am also concerned in de-novo experiments where we lack a reference genome. ...
written 4.2 years ago by VineethVenumadhavan30
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Other RNA removal from RNA-Seq Data
... What is the best resource for other RNA sequences if our aim is to omit Other RNA(if any) contaminants in RNA-Seq Data. This Query seems discussed in different threads, but currently looking for a summarized solution of all such. a) Select all OtherRNAs from NCBI of higher taxonomy filter For ex i ...
genome ngs rna rna-seq written 4.2 years ago by VineethVenumadhavan30 • updated 4.2 years ago by michael.ante3.6k
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Comment: C: Variant Call data annotation and identification of feature type
... Thank you very much.   I understood that it gives almost all feature info. I tried --most_severe flag and also read about SO terms and SO descriptions in help page. ...
written 5.2 years ago by VineethVenumadhavan30

Latest awards to VineethVenumadhavan

Popular Question 9 months ago, created a question with more than 1,000 views. For Choosing K-mer size in Kmergenie for denovo assembly
Popular Question 2.8 years ago, created a question with more than 1,000 views. For Choosing K-mer size in Kmergenie for denovo assembly
Popular Question 2.8 years ago, created a question with more than 1,000 views. For Variant Call data annotation and identification of feature type
Popular Question 5.1 years ago, created a question with more than 1,000 views. For Choosing K-mer size in Kmergenie for denovo assembly

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