User: tiago211287

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tiago211287790
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Posts by tiago211287

<prev • 184 results • page 1 of 19 • next >
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Comment: C: Position Weight Matrix From Sequence Alignment
... Just an update. Now it is called: consensusMatrix() function. ...
written 3 days ago by tiago211287790
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Comment: C: Command or Perl script for changing headers of multiple FASTA files in a specifi
... this is strange to me, it appears that your shell is not exporting the function properly ...
written 10 weeks ago by tiago211287790
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Comment: C: Command or Perl script for changing headers of multiple FASTA files in a specifi
... can you repeat what you're doing and post a screenshot of your screen here? ...
written 10 weeks ago by tiago211287790
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Comment: C: Command or Perl script for changing headers of multiple FASTA files in a specifi
... in order to work you must execute this two lines in your terminal: function sedinho () { sed -i "s/^.*\]/>$1/g" $2;} export -f sedinho you dont need to put this inside a file ...
written 10 weeks ago by tiago211287790
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Answer: A: Command or Perl script for changing headers of multiple FASTA files in a specifi
... First, create a backup of all files before trying this approach. Taking a list of new headers, namely, Headers.txt cat Headers.txt MP.C_AMY2B FP.H_AMY2B in the same order of one fasta files list find . -maxdepth 1 -name "*CDS.fasta" | sort ./Chimpanzee_AMY2B_CDS.fasta ./H ...
written 10 weeks ago by tiago211287790
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Answer: A: Downloading the latest human genome
... There are many places to download the full human genome, I suggest gencode: [Genome sequence, primary assembly (GRCh38)][1] [1]: https://www.gencodegenes.org/ ...
written 10 weeks ago by tiago211287790
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Comment: C: Demultiplexing reads with index present in the labels
... Thanks for your comment. I was aware that I would not get all 10%, but I was hopping to recover ~3% from it. Indeed, it seems to me a good idea to look the number and kind of tags are present in the undertermined file. Contrary to what I thought, most of the reads are crap: AAAAAGAA-AAAAAAAA/ ...
written 11 weeks ago by tiago211287790
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Demultiplexing reads with index present in the labels
... Hello, Earlier I had a problem ( already solved, thanks to the help of Brian Bushnell and Genomax), in which my index reads were not supply in a separated file but in the fastq labels, like this example: @GHAY-HISEQ2:5:2308:2003:1934#TTGCTGGA-ACCAACTG/1;1 NGCATGAACGGCTAAACGAGGGTCCAACTGTCT ...
rnaseq illumina demultiplex index written 11 weeks ago by tiago211287790
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Comment: C: How to split a fastq file into each corresponding sample.fastq?
... I am glad to contribute. ...
written 11 weeks ago by tiago211287790
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Comment: C: How to split a fastq file into each corresponding sample.fastq?
... #In theory 25 sequences \/ wc -l test.fq 100 test.fq head -n8 test.fq @GHAY-HISEQ2:5:2308:2003:1934#TTGCTGGA-ACCAACTG/1;1 NGCATGAACGGCTAAACGAGGGTCCAACTGTCTCTTATCT +GHAY-HISEQ2:5:2308:2003:1934#TTGCTGGA-ACCAACTG/1;1 B[[aaeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee @GHAY- ...
written 11 weeks ago by tiago211287790

Latest awards to tiago211287

Popular Question 8 weeks ago, created a question with more than 1,000 views. For Question about the DESeq2: log2foldchange contradictory
Popular Question 8 weeks ago, created a question with more than 1,000 views. For What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguous)
Popular Question 8 weeks ago, created a question with more than 1,000 views. For What is the definition of a transfrag? What is a transfrag? EDIT:(And faux-read?)
Teacher 10 weeks ago, created an answer with at least 3 up-votes. For A: Must know algorithms before attending a bioinformatics interview
Popular Question 3 months ago, created a question with more than 1,000 views. For What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguous)
Popular Question 3 months ago, created a question with more than 1,000 views. For What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguous)
Popular Question 3 months ago, created a question with more than 1,000 views. For What is the definition of a transfrag? What is a transfrag? EDIT:(And faux-read?)
Popular Question 4 months ago, created a question with more than 1,000 views. For What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguous)
Popular Question 6 months ago, created a question with more than 1,000 views. For What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguous)
Popular Question 7 months ago, created a question with more than 1,000 views. For What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguous)
Popular Question 8 months ago, created a question with more than 1,000 views. For What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguous)
Scholar 8 months ago, created an answer that has been accepted. For A: Mapping My gene list within chromosome bands
Popular Question 11 months ago, created a question with more than 1,000 views. For What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguous)
Commentator 12 months ago, created a comment with at least 3 up-votes. For C: Gviz: How to plot transcripts with grouping given transcript names and a TxDb?
Teacher 12 months ago, created an answer with at least 3 up-votes. For A: Must know algorithms before attending a bioinformatics interview
Teacher 13 months ago, created an answer with at least 3 up-votes. For A: Must know algorithms before attending a bioinformatics interview
Popular Question 13 months ago, created a question with more than 1,000 views. For DESeq input preparation
Popular Question 14 months ago, created a question with more than 1,000 views. For DESeq input preparation
Appreciated 18 months ago, created a post with more than 5 votes. For Can Tophat2 Align a Book?
Appreciated 18 months ago, created a post with more than 5 votes. For C: about editing SAM/BAM files
Teacher 18 months ago, created an answer with at least 3 up-votes. For C: about editing SAM/BAM files
Popular Question 20 months ago, created a question with more than 1,000 views. For What exactly means the Dispersion Plot DESeq2?
Scholar 20 months ago, created an answer that has been accepted. For A: Mapping My gene list within chromosome bands
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Popular Question 22 months ago, created a question with more than 1,000 views. For What exactly means the Dispersion Plot DESeq2?

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