User: tiago211287
tiago211287 • 770
- Reputation:
- 770
- Status:
- Trusted
- Location:
- Brazil
- Last seen:
- 1 day, 23 hours ago
- Joined:
- 3 years ago
- Email:
- t**********@gmail.com
Posts by tiago211287
<prev
• 183 results •
page 1 of 19 •
next >
0
votes
3
answers
276
views
3
answers
... this is strange to me, it appears that your shell is not exporting the function properly ...
written 11 days ago by
tiago211287 • 770
0
votes
3
answers
276
views
3
answers
... can you repeat what you're doing and post a screenshot of your screen here? ...
written 12 days ago by
tiago211287 • 770
0
votes
3
answers
276
views
3
answers
... in order to work you must execute this two lines in your terminal:
function sedinho () { sed -i "s/^.*\]/>$1/g" $2;}
export -f sedinho
you dont need to put this inside a file ...
written 12 days ago by
tiago211287 • 770
1
vote
3
answers
276
views
3
answers
... First, create a backup of all files before trying this approach.
Taking a list of new headers, namely, Headers.txt
cat Headers.txt
MP.C_AMY2B
FP.H_AMY2B
in the same order of one fasta files list
find . -maxdepth 1 -name "*CDS.fasta" | sort
./Chimpanzee_AMY2B_CDS.fasta
./H ...
written 12 days ago by
tiago211287 • 770
1
vote
3
answers
140
views
3
answers
... There are many places to download the full human genome, I suggest gencode:
[Genome sequence, primary assembly (GRCh38)][1]
[1]: https://www.gencodegenes.org/ ...
written 16 days ago by
tiago211287 • 770
0
votes
1
answer
123
views
1
answers
... Thanks for your comment. I was aware that I would not get all 10%, but I was hopping to recover ~3% from it. Indeed, it seems to me a good idea to look the number and kind of tags are present in the undertermined file.
Contrary to what I thought, most of the reads are crap:
AAAAAGAA-AAAAAAAA/ ...
written 18 days ago by
tiago211287 • 770
1
vote
1
answer
123
views
1
answer
... Hello,
Earlier I had a problem ( already solved, thanks to the help of Brian Bushnell and Genomax), in which my index reads were not supply in a separated file but in the fastq labels, like this example:
@GHAY-HISEQ2:5:2308:2003:1934#TTGCTGGA-ACCAACTG/1;1
NGCATGAACGGCTAAACGAGGGTCCAACTGTCT ...
written 18 days ago by
tiago211287 • 770
0
votes
2
answers
196
views
2
answers
... I am glad to contribute. ...
written 19 days ago by
tiago211287 • 770
0
votes
2
answers
196
views
2
answers
... #In theory 25 sequences \/
wc -l test.fq
100 test.fq
head -n8 test.fq
@GHAY-HISEQ2:5:2308:2003:1934#TTGCTGGA-ACCAACTG/1;1
NGCATGAACGGCTAAACGAGGGTCCAACTGTCTCTTATCT
+GHAY-HISEQ2:5:2308:2003:1934#TTGCTGGA-ACCAACTG/1;1
B[[aaeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeeee
@GHAY- ...
written 19 days ago by
tiago211287 • 770
0
votes
2
answers
196
views
2
answers
... Thank you very much Brian. ...
written 19 days ago by
tiago211287 • 770
Latest awards to tiago211287
Teacher
16 days ago,
created an answer with at least 3 up-votes.
For A: Must know algorithms before attending a bioinformatics interview
Popular Question
5 weeks ago,
created a question with more than 1,000 views.
For What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguous)
Popular Question
7 weeks ago,
created a question with more than 1,000 views.
For What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguous)
Popular Question
7 weeks ago,
created a question with more than 1,000 views.
For What is the definition of a transfrag? What is a transfrag? EDIT:(And faux-read?)
Popular Question
11 weeks ago,
created a question with more than 1,000 views.
For What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguous)
Popular Question
4 months ago,
created a question with more than 1,000 views.
For What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguous)
Popular Question
5 months ago,
created a question with more than 1,000 views.
For What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguous)
Popular Question
6 months ago,
created a question with more than 1,000 views.
For What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguous)
Scholar
6 months ago,
created an answer that has been accepted.
For A: Mapping My gene list within chromosome bands
Popular Question
9 months ago,
created a question with more than 1,000 views.
For What does this Warning in HTSeq-count means? (Warning: Mate pairing was ambiguous)
Commentator
10 months ago,
created a comment with at least 3 up-votes.
For C: Gviz: How to plot transcripts with grouping given transcript names and a TxDb?
Teacher
10 months ago,
created an answer with at least 3 up-votes.
For A: Must know algorithms before attending a bioinformatics interview
Teacher
11 months ago,
created an answer with at least 3 up-votes.
For A: Must know algorithms before attending a bioinformatics interview
Popular Question
11 months ago,
created a question with more than 1,000 views.
For DESeq input preparation
Popular Question
12 months ago,
created a question with more than 1,000 views.
For DESeq input preparation
Appreciated
16 months ago,
created a post with more than 5 votes.
For C: about editing SAM/BAM files
Teacher
16 months ago,
created an answer with at least 3 up-votes.
For C: about editing SAM/BAM files
Popular Question
18 months ago,
created a question with more than 1,000 views.
For What exactly means the Dispersion Plot DESeq2?
Scholar
18 months ago,
created an answer that has been accepted.
For A: Mapping My gene list within chromosome bands
Voter
19 months ago,
voted more than 100 times.
Popular Question
20 months ago,
created a question with more than 1,000 views.
For What exactly means the Dispersion Plot DESeq2?
Popular Question
22 months ago,
created a question with more than 1,000 views.
For Help with 2 list in R, comparing gene ID to get refined information from both
Centurion
24 months ago,
created 100 posts.
Scholar
24 months ago,
created an answer that has been accepted.
For A: Mapping My gene list within chromosome bands
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 686 users visited in the last hour