User: ruchikabhat31

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Posts by ruchikabhat31

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Comment: C: How to get total count of organisms with whole genome sequenced
... I just need to cite **one number** as total organisms for whole genome sequenced. Citing two different numbers will create chaos. ...
written 3 months ago by ruchikabhat3130
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Comment: C: How to get total count of organisms with whole genome sequenced
... Yes, but which value to take is my question as the FTP site has given different values like I mentioned in the main question. If I check through FTP on a given date the number is way different than the link https://www.ncbi.nlm.nih.gov/genome/browse/ That's what I have asked in the main question t ...
written 3 months ago by ruchikabhat3130
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Comment: C: How to get total count of organisms with whole genome sequenced
... And Genbank file: $ cat assembly_summary_genbank.txt | grep "Complete Genome" | cut -f 7 | sort | uniq | wc -l 2858 which one to report? ...
written 3 months ago by ruchikabhat3130
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Comment: C: How to get total count of organisms with whole genome sequenced
... Similar lines I checked for refseqs $ cat assembly_summary_refseq.txt | grep "Complete Genome" | cut -f 7 | sort | uniq | wc -l 9788 Do you find reporting 9788 organisms would be an authentic data ? ...
written 3 months ago by ruchikabhat3130
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Comment: C: How to get total count of organisms with whole genome sequenced
... By complete I mean whole genome sequence has been sequenced. The same way the sequencing projects are termed as complete genomes, short contigs etc. NCBI has the terminology for reference genome for the ones that have been sequenced fully and are curated manually. Not to confuse you more by comple ...
written 3 months ago by ruchikabhat3130
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How to get total count of organisms with whole genome sequenced
... Hi all, I checked the NCBI FTP site: ftp://ftp.ncbi.nih.gov/genomes/ Here the no. of organisms reported is approximately 389 (for eukaryotes I guess) and there is separate directory for viruses However, this link: https://www.ncbi.nlm.nih.gov/genome/browse/ shows something 7313 for prokaryotes (if ...
ncbi genome organisms written 3 months ago by ruchikabhat3130 • updated 3 months ago by shenwei3563.1k
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Find delta G values
... Hi all, I am trying to find the experimental free energy estimated from Ki values / IC50 values and Kd values of a given protein ligand 3D structure in RCSB or PubChem or ChEMBL. Can someone guide me towards how to figure out Delta G i.e Free energy binding of a protein ligand structure from thes ...
ki values kd values ic 50 values free energy written 11 months ago by ruchikabhat3130
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Comment: C: Sites for Computer Aided Drug Designing
... The site has complete suite ...
written 2.2 years ago by ruchikabhat3130
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Answer: A: Sites for Computer Aided Drug Designing
... Thanks Malachi Griffith for listing softwares. Ya the site was helpful Caroline! Thank you. Cheers! ...
written 2.2 years ago by ruchikabhat3130
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Sites for Computer Aided Drug Designing
... Hello Everyone, Related to the Computer Aided Drug Designing, which are some of the useful sites for the in silico drug designing, where the pipeline and the CADD related softwares are available (preferably open sources). I knew about a few like Yang Zhang Lab, Sanjeevini, I Any guidance related t ...
simulations in silico cadd docking written 2.6 years ago by ruchikabhat3130

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Popular Question 7 months ago, created a question with more than 1,000 views. For Sites for Computer Aided Drug Designing

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