User: Coryza

gravatar for Coryza
Coryza380
Reputation:
380
Status:
Trusted
Location:
Netherlands
Last seen:
3 years, 1 month ago
Joined:
4 years, 6 months ago
Email:
k***********@gmail.com

Posts by Coryza

<prev • 50 results • page 1 of 5 • next >
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Comment: C: Looking for open visualization problems in bioinformatics
... Check http://www.croppedia.com/wp-content/themes/admium/images/benefits/CropPEdiaNG-variomics.png > Croppedia. Screen = example case of visualizing 131 Rice lines, with a powerful interface to extract all sorts of overlap/patterns. ...
written 3.2 years ago by Coryza380
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Comment: C: parsing a multiple sequence alignment file
... It's blank ...
written 3.6 years ago by Coryza380
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Comment: C: pangenome of mycobacterium
... Kind of a broad question. Have you at all googled? This might help you; http://www.ncbi.nlm.nih.gov/pubmed/25781462 ...
written 3.6 years ago by Coryza380
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Comment: C: parsing a multiple sequence alignment file
... Not sure what you mean... give a example please of how it is now, and how you would like to see it. ...
written 3.6 years ago by Coryza380
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Comment: C: MSA INDEL Realigner
... Hi - I've looked into your suggestions and it seems that it's exactly doing as how I would want it to do.  ...
written 3.6 years ago by Coryza380
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MSA INDEL Realigner
... Hi all, Does someone know if there's a tool that is able to realign INDELs based on MSA (preferably clustalw/clustalo) output; similar as to what GATK does on BAM files?   Thanks!   ...
indels msa realign written 3.6 years ago by Coryza380 • updated 2.6 years ago by Biostar ♦♦ 20
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Comment: C: Getting A Vcf File From A Fasta Alignment
... Hi Pierre,   Thanks for this! Would it be possible to output EVERY position on the reference as VCF format? (no coverage = ./., and if same as reference = 0/0)? Otherwise I can't merge VCF files of different samples together.... ...
written 3.6 years ago by Coryza380
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Comment: C: Generate a VCF File for Different Reference Sequences
... Hi Joe. Do you have this script available somewhere? :') ...
written 3.6 years ago by Coryza380
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Split PacBio bax.h5 files
... Hi, I have a set of 21 bax.h5 files (7 smrt cells) and I was wondering whether someone knows if it is possible to split these bax.h5 files (so lets say I want 84 bax.h5 files instead of 21). This for downstream processing where we run into memory problems. Thanks.. ...
pacbio split baxh5 written 3.6 years ago by Coryza380 • updated 3.6 years ago by Biostar ♦♦ 20
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Comment: C: BLASR/Bowtie2 short alignments
... I've tried the other way around for blasr, no results. Furthermore: If it would have worked - how then retrieve all hits? Because most likely in that case it will match > 10K reads. ...
written 3.7 years ago by Coryza380

Latest awards to Coryza

Popular Question 3.5 years ago, created a question with more than 1,000 views. For De-Novo Genome Assemblies Comparison
Good Answer 4.1 years ago, created an answer that was upvoted at least 5 times. For A: VCF header line counting
Appreciated 4.1 years ago, created a post with more than 5 votes. For C: Next Gen seq for Job interview
Teacher 4.1 years ago, created an answer with at least 3 up-votes. For A: What should I looking for at the beginning (Master degree in Computer Science)
Appreciated 4.1 years ago, created a post with more than 5 votes. For C: Next Gen seq for Job interview
Commentator 4.1 years ago, created a comment with at least 3 up-votes. For C: Next Gen seq for Job interview
Teacher 4.4 years ago, created an answer with at least 3 up-votes. For A: What should I looking for at the beginning (Master degree in Computer Science)
Scholar 4.5 years ago, created an answer that has been accepted. For A: What should I looking for at the beginning (Master degree in Computer Science)
Scholar 4.5 years ago, created an answer that has been accepted. For A: What should I looking for at the beginning (Master degree in Computer Science)
Teacher 4.5 years ago, created an answer with at least 3 up-votes. For A: What should I looking for at the beginning (Master degree in Computer Science)

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