User: Jonathanjacobs

gravatar for Jonathanjacobs
Reputation:
210
Status:
Trusted
Location:
Rockville, MD
Website:
http://microbe.land/
Twitter:
bioinformer
Scholar ID:
Google Scholar Page
Last seen:
1 week ago
Joined:
8 years, 2 months ago
Email:
j**************@gmail.com

I am currently Director of Global Product Development for Qiagen’s genomic and bioinformatics analysis portfolio. You can also catch up with me on Twitter (@bioinformer).  My professional interests include genomics-led research & discovery - especially in the microbial genomics arena, development of human and animal disease diagnostics, and mobilizing genomics systems for use in the field and at the point of care. 

Posts by Jonathanjacobs

<prev • 24 results • page 1 of 3 • next >
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Answer: A: Results are now available for the precisionFDA CDRH Biothreat Challenge!
... I was happy we could participate and that we “placed”. I only wish I had known ahead of time we could have submitted more than one answer to the challenge. 😉😊 ...
written 12 weeks ago by Jonathanjacobs210
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Answer: A: Where can I find publicly available metagenomics contig datsets?
... I believe ENA and SRA have draft assemblies of MAGs - metagenomic assembled genomes - which is what you are looking for. I’m pretty sure all the MAGs (7000+) from the recent landmark paper from Parks et.al 2017 were deposited into Genbank under a single bioproject along with their predicted taxonomy ...
written 12 weeks ago by Jonathanjacobs210
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Comment: C: 97 Different Ways to do Metagenomics Classification...
... Thanks for the clarification. Also - here’s a direct link to the Zotero repo I have with the citations https://www.zotero.org/groups/2255187/microbial_genomics_references/items? (which i believe should include links to the articles and ability to download as bibtex, etc) ...
written 3 months ago by Jonathanjacobs210
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Blog: 97 Different Ways to do Metagenomics Classification...
... Hey all - I’ve notice a lot of people asking “how do i do X” wrt metagenomics or microbiome profiling. Or similarly- “Whats the best database / method / approach / etc?” for metagenomics. The reality is that it depends... on your specific research question, and on the underlying database you want / ...
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Job: Postdoctoral Research Associate, Bioinformatics & Microbial Genomics, MRIGlobal, Gaithersburg, MD, USA
... **SHORT LINK: https://goo.gl/NgnDjm** We currently have an opening for a Postdoctoral Research Associate in Bioinformatics which is available immediately and located in **Gaithersburg, MD.** The successful candidate will join a team of researchers at MRIGlobal actively conducting genomics-based res ...
bioinformatics virology job genomics microbiology written 18 months ago by Jonathanjacobs210 • updated 18 months ago by genomax67k
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Job: Associate Scientist: Microbial Genomics & Bioinformatics (US citizenship required), Rockville, MD, USA
... **Associate Scientist: Microbial Genomics & Bioinformatics** **CLICK HERE TO APPLY: https://goo.gl/Ozl3XC** Founded in 1944, MRIGlobal is an independent, not-for-profit organization that performs contract research and other services for clients in business, industry and government. We current ...
bioinformatics job microbial genomics biosurveillance written 3.0 years ago by Jonathanjacobs210 • updated 3.0 years ago by Istvan Albert ♦♦ 80k
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Job: Postdoctoral Research Associate – Bioinformatics & Microbial Genomics, MRIGlobal, Rockville, DC, USA
... Postdoctoral Research Associate – Bioinformatics & Microbial Genomics Founded in 1944, MRIGlobal is an independent, not-for-profit organization that performs contract research and other services for clients in business, industry and government. We currently have an opening for a Postdoctoral R ...
virology postdoc biodefense microbiology job written 4.0 years ago by Jonathanjacobs210 • updated 4.0 years ago by Istvan Albert ♦♦ 80k
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Answer: A: How To Remove All Hypothetical Protein From Genbank File
... You don't need BioPerl / BioPython for this. If you know how many lines your annotation takes up (assuming its fixed) - then you can do something like this from the command line in Linux > sed 's/(\s{5}ANNOTATION_NAME\s+.+?\n)(.+?\n){NUMBEROFLINESTOREMOVE}//g' GENBANKFILE.gbk > NEWGENBANKFIL ...
written 4.5 years ago by Jonathanjacobs210
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Comment: C: What Are These Rp11 'Genes' In The Genome?
... Mark - do you have a reference for this? ...
written 5.1 years ago by Jonathanjacobs210
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Answer: A: Industrial Postdoctoral Fellowship In Metagenomics, Environmental Microbiology,
... The position in my group is still open and has immediate funding. Feel free to message me if you have any questions. ...
written 5.4 years ago by Jonathanjacobs210

Latest awards to Jonathanjacobs

Scholar 12 weeks ago, created an answer that has been accepted. For A: Where can I find publicly available metagenomics contig datsets?
Supporter 7 months ago, voted at least 25 times.
Commentator 7 months ago, created a comment with at least 3 up-votes. For C: What Are These Rp11 'Genes' In The Genome?
Teacher 5.4 years ago, created an answer with at least 3 up-votes. For A: Do You Feel Good Or Bad About Putting Your Photo At Biostar?
Autobiographer 5.4 years ago, has more than 80 characters in the information field of the user's profile.

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