User: shelkmike
shelkmike • 20
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Posts by shelkmike
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... Thank you for your response.
The aim of the work is simply to build a correct tree of species. Information from only 'complete' orthogroups is insufficient for this, due to a low number of such orthogroups.
> If you use your approach and replace missing sequences with all gaps (or Ns), there wi ...
written 8 months ago by
shelkmike • 20
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... Hello, everyone.
I'm building a phylogenetic tree from sequenced transcriptomes of 100 species. I've calculated orthogroups by OrthoMCL and will build a tree by RAxML.
In the most articles I've seen that authors take for tree building only those orthogroups, which have exactly one gene from each s ...
written 8 months ago by
shelkmike • 20
• updated
8 months ago by
Brice Sarver • 2.3k
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... Hi Pierre!
Mapsembler is a useful program, I use it since it's first version (my paper citing it will be published soon). However, I think, mapsembler needs a more detailed manual, describing more thoroughly its parameters and algorithm.
Especially, I would like to ask (about Mapsembler2 ver 2.2. ...
written 2.5 years ago by
shelkmike • 20
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