User: shelkmike

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shelkmike10
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Location:
Russian Federation
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Posts by shelkmike

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Comment: C: Phylogeny from incomplete orthogroups
... Thank you for your response. The aim of the work is simply to build a correct tree of species. Information from only 'complete' orthogroups is insufficient for this, due to a low number of such orthogroups. > If you use your approach and replace missing sequences with all gaps (or Ns), there wi ...
written 5 months ago by shelkmike10
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Phylogeny from incomplete orthogroups
... Hello, everyone. I'm building a phylogenetic tree from sequenced transcriptomes of 100 species. I've calculated orthogroups by OrthoMCL and will build a tree by RAxML. In the most articles I've seen that authors take for tree building only those orthogroups, which have exactly one gene from each s ...
phylogenetics orthogroups orthomcl rna-seq written 5 months ago by shelkmike10 • updated 5 months ago by Brice Sarver2.3k
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Answer: A: Mapsembler2 targeted micro assembly and visualization of the local assembly grap
... Hi Pierre! Mapsembler is a useful program, I use it since it's first version (my paper citing it will be published soon). However, I think, mapsembler needs a more detailed manual, describing more thoroughly its parameters and algorithm. Especially, I would like to ask (about Mapsembler2  ver 2.2. ...
written 2.3 years ago by shelkmike10

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Supporter 5 months ago, voted at least 25 times.

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