User: Antonio R. Franco
Antonio R. Franco • 4.0k
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- Spain. Universidad de Córdoba
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Posts by Antonio R. Franco
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... Give a try to programs like [Mauve][1]
[1]: http://darlinglab.org/mauve/user-guide/introduction.html ...
written 5 weeks ago by
Antonio R. Franco • 4.0k
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Comment:
C: Need Oligo6 software
... And Oligo 7 is out since a lot of time ago..
...
written 10 weeks ago by
Antonio R. Franco • 4.0k
1
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3
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844
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3
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Answer:
A: Integrating DMR data
... If you provide a gft file (or a gff file converted to a gtf), and a BED file, a nice option is to use [rgmatch.py][1]
This program only needs a simple command lane documented in the web page, and gives you the position of the DMR (or any other feature) in the many places you choose, such as Upstrea ...
written 12 weeks ago by
Antonio R. Franco • 4.0k
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... If you intention is to map long sequences (EST, contigs,..) to the genome, take a look to [GMAP][1]
[1]: http://research-pub.gene.com/gmap/ ...
written 3 months ago by
Antonio R. Franco • 4.0k
0
votes
2
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197
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... I think you will see [BBSplit][1] interesting for your purpose
[1]: http://seqanswers.com/forums/showthread.php?t=41288 ...
written 3 months ago by
Antonio R. Franco • 4.0k
1
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1
answer
182
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1
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... Convert res to a data.frame
res_data <- as.data.frame(res)
Then, you can join your data with the [dplyr::left_join function][1] or any other similar
[1]: https://dplyr.tidyverse.org/reference/join.html
To do so, you must have a column in the res file and in the annotation file with th ...
written 3 months ago by
Antonio R. Franco • 4.0k
0
votes
1
answer
181
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1
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... May I suggest to use `samtools view -H ${F}` so only the header will be extracted and inspectioned ? ...
written 3 months ago by
Antonio R. Franco • 4.0k
0
votes
2
answers
276
views
2
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... I don't see among your scripts any related to the sorting of the sam/bam file
You have `samtools sort` for that purpose..
...
written 4 months ago by
Antonio R. Franco • 4.0k
1
vote
2
answers
276
views
2
answers
... It is sort of hard to understand your questions but if you want to filter your library, take a look to [BBSplit][1]
[1]: http://seqanswers.com/forums/showthread.php?t=41288 ...
written 4 months ago by
Antonio R. Franco • 4.0k
2
votes
2
answers
248
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2
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... You cannot convert colorSpace to base format. One incorrect color/transition will propagate such that all the remaining bases will be incorrect upon conversion.
Old versions of Tophat still can map solid sequences. You are running out of alternatives ...
written 7 months ago by
Antonio R. Franco • 4.0k
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For Recommended coverage for methylome analysis
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For Recommended coverage for methylome analysis
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For A: is there any databse that provides the promoter of a specific gene?
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For A: is there any databse that provides the promoter of a specific gene?
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9 months ago,
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For A: is there any databse that provides the promoter of a specific gene?
Teacher
9 months ago,
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For A: is there any databse that provides the promoter of a specific gene?
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For Recommended coverage for methylome analysis
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For A: is there any databse that provides the promoter of a specific gene?
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For A: is there any databse that provides the promoter of a specific gene?
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