User: Antonio R. Franco

Reputation:
4,050
Status:
Trusted
Location:
Spain. Universidad de Córdoba
Last seen:
15 hours ago
Joined:
4 years, 9 months ago
Email:
a*******@uco.es

Posts by Antonio R. Franco

<prev • 570 results • page 1 of 57 • next >
1
vote
2
answers
180
views
2
answers
Answer: A: How can I compare two reference genome
... Give a try to programs like [Mauve][1] [1]: http://darlinglab.org/mauve/user-guide/introduction.html ...
written 5 weeks ago by Antonio R. Franco4.0k
0
votes
0
answers
134
views
0
answers
Comment: C: Need Oligo6 software
... And Oligo 7 is out since a lot of time ago.. ...
written 10 weeks ago by Antonio R. Franco4.0k
1
vote
3
answers
844
views
3
answers
Answer: A: Integrating DMR data
... If you provide a gft file (or a gff file converted to a gtf), and a BED file, a nice option is to use [rgmatch.py][1] This program only needs a simple command lane documented in the web page, and gives you the position of the DMR (or any other feature) in the many places you choose, such as Upstrea ...
written 12 weeks ago by Antonio R. Franco4.0k
0
votes
2
answers
4.4k
views
2
answers
Answer: A: Any Free Software Similar To Sequencher?
... If you intention is to map long sequences (EST, contigs,..) to the genome, take a look to [GMAP][1] [1]: http://research-pub.gene.com/gmap/ ...
written 3 months ago by Antonio R. Franco4.0k
0
votes
2
answers
197
views
2
answers
Answer: A: How to remove the contaminant reads from metagenome sequencing
... I think you will see [BBSplit][1] interesting for your purpose [1]: http://seqanswers.com/forums/showthread.php?t=41288 ...
written 3 months ago by Antonio R. Franco4.0k
1
vote
1
answer
182
views
1
answers
Answer: A: How to join DESeq2 object "res" to the gene annotation with dplyr?
... Convert res to a data.frame res_data <- as.data.frame(res) Then, you can join your data with the [dplyr::left_join function][1] or any other similar [1]: https://dplyr.tidyverse.org/reference/join.html To do so, you must have a column in the res file and in the annotation file with th ...
written 3 months ago by Antonio R. Franco4.0k
0
votes
1
answer
181
views
1
answers
Comment: C: How to remove bam files that don't contain matching reads
... May I suggest to use `samtools view -H ${F}` so only the header will be extracted and inspectioned ? ...
written 3 months ago by Antonio R. Franco4.0k
0
votes
2
answers
276
views
2
answers
Comment: C: Difficulty in Host removal by Bowtie2,samtools and bedtools
... I don't see among your scripts any related to the sorting of the sam/bam file You have `samtools sort` for that purpose.. ...
written 4 months ago by Antonio R. Franco4.0k
1
vote
2
answers
276
views
2
answers
Answer: A: Difficulty in Host removal by Bowtie2,samtools and bedtools
... It is sort of hard to understand your questions but if you want to filter your library, take a look to [BBSplit][1] [1]: http://seqanswers.com/forums/showthread.php?t=41288 ...
written 4 months ago by Antonio R. Franco4.0k
2
votes
2
answers
248
views
2
answers
Answer: A: FastQ ColorSpace to BaseSpace format in 2018
... You cannot convert colorSpace to base format. One incorrect color/transition will propagate such that all the remaining bases will be incorrect upon conversion. Old versions of Tophat still can map solid sequences. You are running out of alternatives ...
written 7 months ago by Antonio R. Franco4.0k

Latest awards to Antonio R. Franco

Popular Question 6 months ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Popular Question 7 months ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Scholar 7 months ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Appreciated 7 months ago, created a post with more than 5 votes. For A: Must know algorithms before attending a bioinformatics interview
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Teacher 9 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Popular Question 10 months ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Popular Question 12 months ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Popular Question 14 months ago, created a question with more than 1,000 views. For How to get native bash in Windows 10
Appreciated 14 months ago, created a post with more than 5 votes. For A: Must know algorithms before attending a bioinformatics interview
Student 15 months ago, asked a question with at least 3 up-votes. For Is qPCR actually required for RNA-Seq validation ?
Scholar 15 months ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Popular Question 16 months ago, created a question with more than 1,000 views. For How to get native bash in Windows 10
Popular Question 17 months ago, created a question with more than 1,000 views. For How to get native bash in Windows 10
Teacher 18 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Epic Question 18 months ago, created a question with more than 10,000 views. For Can the code of a R package be changed? How?
Good Answer 19 months ago, created an answer that was upvoted at least 5 times. For A: Can I assemble a Eukaryote RNA-Seq using my laptop?
Appreciated 19 months ago, created a post with more than 5 votes. For A: Must know algorithms before attending a bioinformatics interview
Popular Question 21 months ago, created a question with more than 1,000 views. For Cuffcompare. Differences between class codes "=" and "i"
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1034 users visited in the last hour