User: Antonio R. Franco

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4,480
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Location:
Spain. Universidad de Córdoba
Last seen:
2 days, 5 hours ago
Joined:
5 years, 10 months ago
Email:
a*******@uco.es

Posts by Antonio R. Franco

<prev • 619 results • page 1 of 62 • next >
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Comment: C: ChIP-seq analysis guidance for a beginner
... have you already obtained the sequences ?. I mean the places your protein bind ...
written 4 weeks ago by Antonio R. Franco4.5k
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Answer: A: GO enrichment analysis on my own gene list
... Try this web service [http://plantregmap.cbi.pku.edu.cn/go.php][1]. It contains many databases for GO enrichment analysis. You only need to select your specie and include the name of the genes to analyze. You can also download the databases [1]: http://plantregmap.cbi.pku.edu.cn/go.php ...
written 5 weeks ago by Antonio R. Franco4.5k
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Comment: C: bowtie2 version-2.1.0 to 2.2.9 installation in ubuntu
... Look for information about the **export** function of Unix/Linux to include new directories to your path ...
written 7 weeks ago by Antonio R. Franco4.5k
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Answer: A: Meaning of columns in TSV Kallisto mapped file
... Shame on me. After the latest update of LibreOffice, it does not handle the "." and the "," as before. I am spanish, and the "." are not meaning decimals. For that, we use colon ",". But in any case, LibreOffice is not doing a nice job anyway. If found 43.663, it converted to 43663. But afte ...
written 7 weeks ago by Antonio R. Franco4.5k
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Meaning of columns in TSV Kallisto mapped file
... I've been using the abundance.tsv files found after mapping with kallisto. You see 4 different columns but I am sort of confused about the actual values shown in these columns Can somebody enlight me?. I cannot find details on how these values are calculated in the Kallisto manual In particular. ...
tpm kallisto differential expression written 7 weeks ago by Antonio R. Franco4.5k
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Comment: C: technique to assemble mitochondria from whole genome
... Wondering how can you accomplish this when bacteria lacks of mitochondria ...
written 3 months ago by Antonio R. Franco4.5k
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Comment: C: Can the code of a R package be changed? How?
... I don't think you can permanently change and/or compile a package using RStudio.. There are many books and references in the web to learn about it ...
written 3 months ago by Antonio R. Franco4.5k
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Answer: A: When should one be concerned about the CG content in RNA-seq experiment?
... I got a similar GC content graphic when analyzing the transcriptome of olive roots infected with a fungus. It turn out that after 7 and 15 days the population of new and opportunistic microorganisms evolved along the infection and changed the GC peaks from a unimodal peak to a composed curve like ...
written 3 months ago by Antonio R. Franco4.5k
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Comment: C: DEG analysis when not replicates are available
... As a biologist with poor knowledge, I think statistic could be a double-edged sword.. I only have that feeling, but not or the capacity by any means a way to demonstrate that. And honestly sometimes I believe this could be an advantage. This is one case. There are some other cases in which a stron ...
written 3 months ago by Antonio R. Franco4.5k
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Answer: A: DEG analysis when not replicates are available
... My 5 cents Found some SRA data related to roots infected with a fungus. Got personal interest in analyzing these data. **SRA data did not contain replicates** In the meantime, the authors of the SRA data published a paper. However, neither the DE genes nor the GO enrichment published had sense to ...
written 3 months ago by Antonio R. Franco4.5k

Latest awards to Antonio R. Franco

Scholar 7 weeks ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Popular Question 5 months ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Scholar 5 months ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Student 6 months ago, asked a question with at least 3 up-votes. For How would you discover the source of contaminant DNA ?
Popular Question 6 months ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Scholar 7 months ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Scholar 7 months ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Scholar 8 months ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Scholar 9 months ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Appreciated 9 months ago, created a post with more than 5 votes. For A: Must know algorithms before attending a bioinformatics interview
Good Answer 9 months ago, created an answer that was upvoted at least 5 times. For A: Can I assemble a Eukaryote RNA-Seq using my laptop?
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Popular Question 12 months ago, created a question with more than 1,000 views. For The NAR annual Web Server Issue is here..
Popular Question 12 months ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Popular Question 19 months ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Popular Question 20 months ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Scholar 20 months ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Teacher 20 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Appreciated 21 months ago, created a post with more than 5 votes. For A: Must know algorithms before attending a bioinformatics interview
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Teacher 22 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Popular Question 2.0 years ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis

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