User: Antonio R. Franco

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Spain. Universidad de Córdoba
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13 hours ago
Joined:
3 years, 9 months ago
Email:
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Posts by Antonio R. Franco

<prev • 547 results • page 1 of 55 • next >
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Comment: A: Conversion of Fasta file
... Fastq stands for fasta files that contains Quality values for every single sequenced base You can create fasta files by extracting the information from fastq files, but you can't do the reverse without having the quality values ...
written 2 days ago by Antonio R. Franco3.7k
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Answer: A: Exonic SNPs extraction
... There are some programs that, having a gtf or gff file with your annotations, let you to extract regions of your genome. One of such programs is [rgmatch][1] [1]: https://bitbucket.org/pfurio/rgmatch ...
written 12 days ago by Antonio R. Franco3.7k
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Answer: A: rRNA remove from RNAseq data
... There is a program named [BBSplit][1] that you can use to filter and remove your undesired sequences [1]: http://seqanswers.com/forums/showthread.php?t=41288 ...
written 12 days ago by Antonio R. Franco3.7k
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Comment: A: De novo plant genome assembly
... Give a look to the BioNano optical maps and its use in getting an assembled genome ...
written 20 days ago by Antonio R. Franco3.7k
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Answer: A: how can we create heat map for only upregulated gene list
... You need to filter your data. There is not mention to the method you got your data, but you can use R, excel and many other programs to filter ...
written 20 days ago by Antonio R. Franco3.7k
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Asking about programs and methods to get gene methylation profiles
... Can you gently provide me with programs and methods to get gene methylation profiles such as the image shown below ![enter image description here][1] [1]: https://i.imgur.com/N50VCZm.png ...
profiles methylation written 26 days ago by Antonio R. Franco3.7k • updated 26 days ago by igor6.4k
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Answer: A: Salmon choosing library type
... Only to complete information for future use I am not familiar with Salmon, but many different papers relate that both, Kallisto and Salmon provide you with (almost) the same output. Kallisto however, has the options --rf-stranded and --fr-stranded for its use in dUTP or Illumina libraries, respecti ...
written 26 days ago by Antonio R. Franco3.7k
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Answer: A: What are the best tools for visualizing DNA methylation result?
... Take a look to these utilities. They have graphical output of your interest 1. [methgo][1]. Make it easy to study methylation in different parts of the genome if you provide a gtf file 2. [CGmaptools][2]. It contains 40 utilities, letting you to evaluate from mbias to DMR, and bin graphics [1] ...
written 28 days ago by Antonio R. Franco3.7k
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Answer: A: Gallery: Computational tools for DNA methylation
... [cgmaptools][1], a collection of programs to handle methylation data [1]: https://cgmaptools.github.io/ ...
written 4 weeks ago by Antonio R. Franco3.7k
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Answer: A: RPKM to TPM conversion?
... [Give a look to this vídeo][1] that explain the difference between RPKM, FPKM and TPM [1]: https://www.youtube.com/watch?v=TTUrtCY2k-w ...
written 4 weeks ago by Antonio R. Franco3.7k

Latest awards to Antonio R. Franco

Popular Question 6 weeks ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Popular Question 11 weeks ago, created a question with more than 1,000 views. For How to get native bash in Windows 10
Appreciated 3 months ago, created a post with more than 5 votes. For A: Must know algorithms before attending a bioinformatics interview
Student 3 months ago, asked a question with at least 3 up-votes. For Is qPCR actually required for RNA-Seq validation ?
Scholar 4 months ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Teacher 4 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Popular Question 5 months ago, created a question with more than 1,000 views. For How to get native bash in Windows 10
Popular Question 6 months ago, created a question with more than 1,000 views. For How to get native bash in Windows 10
Teacher 7 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Epic Question 7 months ago, created a question with more than 10,000 views. For Can the code of a R package be changed? How?
Good Answer 8 months ago, created an answer that was upvoted at least 5 times. For A: Can I assemble a Eukaryote RNA-Seq using my laptop?
Appreciated 8 months ago, created a post with more than 5 votes. For A: Must know algorithms before attending a bioinformatics interview
Popular Question 10 months ago, created a question with more than 1,000 views. For Cuffcompare. Differences between class codes "=" and "i"
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Popular Question 13 months ago, created a question with more than 1,000 views. For Cuffcompare. Differences between class codes "=" and "i"
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Popular Question 15 months ago, created a question with more than 1,000 views. For Cuffcompare. Differences between class codes "=" and "i"
Popular Question 15 months ago, created a question with more than 1,000 views. For Synchronization of fastq files
Great Question 16 months ago, created a question with more than 5,000 views. For Can the code of a R package be changed? How?
Scholar 20 months ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Commentator 21 months ago, created a comment with at least 3 up-votes. For C: Why mate-Paired end, Paired-end and Single End reads library to be combined for
Teacher 21 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Student 21 months ago, asked a question with at least 3 up-votes. For Is qPCR actually required for RNA-Seq validation ?
Scholar 21 months ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?

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