Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Tutorials
Tools
Jobs
Forum
Planet
All »
Home
Log In

User: Antonio R. Franco

gravatar for Antonio R. Franco
Reputation:
4,310
Status:
Trusted
Location:
Spain. Universidad de Córdoba
Last seen:
21 hours ago
Joined:
5 years, 3 months ago
Email:
a*******@uco.es

Posts by Antonio R. Franco

<prev • 594 results • page 1 of 60 • next >
1
vote
3
answers
88
views
3
answers
Comment: C: Gene Ontology enrichment analysis of biological processes for up- and down-regul
... Another posibility is to use **Tools : GO enrichment** feature included into the [PlantRegMet][1] web page, but this does not require the use of R. It gives you some graphics, but you don't have the control of them [1]: http://plantregmap.cbi.pku.edu.cn/ ...
written 21 hours ago by Antonio R. Franco • 4.3k
0
votes
1
answer
59
views
1
answers
Comment: C: What to do to include data from strawberry in Biomart Ensembl
... Emily.. Thank you for your efforts. Your are very kind.. ...
written 21 hours ago by Antonio R. Franco • 4.3k
0
votes
1
answer
59
views
1
answers
Comment: A: What to do to include data from strawberry in Biomart Ensembl
... Thank you for your answer... Who has to include that information into the INSDC?. Data is already publicly available in the rosaceae.org pages. Wondering if any of us can give a push to this... ...
written 21 hours ago by Antonio R. Franco • 4.3k
0
votes
3
answers
88
views
3
answers
Answer: A: Gene Ontology enrichment analysis of biological processes for up- and down-regul
... To be honest, stepwise guidance is obtained from the R vignettes included in each of the packages. By searching into Bioconductor, you can get many different packages dealing with GO (topGo, and the like....) Most cases you only need to adjust the code included into the vignettes with the names of ...
written 22 hours ago by Antonio R. Franco • 4.3k
2
votes
1
answer
59
views
1
answer
What to do to include data from strawberry in Biomart Ensembl
... Strawberry has got its 4th and mature genome, assembled with PacBio and optical maps. Annotation has very much improved with years But many of us miss that information in key databases like Biomart. An I am wondering what it would be required to get this information included in this database Any c ...
ensembl written 22 hours ago by Antonio R. Franco • 4.3k
0
votes
1
answer
93
views
1
answers
Comment: A: Bowtie2 perl:warning:Setting local failes
... If you don't have permissions, it is likely you need to contact the administrator of that computer to fix the problem ...
written 5 weeks ago by Antonio R. Franco • 4.3k
1
vote
2
answers
117
views
2
answers
Comment: C: gene ontology enrichment analysis
... Notice that the EnrichR example file you can load from that page contains 1000 genes... I emphasize that a GO enrichment with such a poor number of genes (19) is unlikely to be performed ...
written 6 weeks ago by Antonio R. Franco • 4.3k
0
votes
2
answers
117
views
2
answers
Answer: A: gene ontology enrichment analysis
... Almost any program or service will do, like [GO ontology][1] But.. the problem you are facing is that the statistical power you have to run an enrichment with the GO terms included in only 19 genes could be not enough [1]: http://geneontology.org/ ...
written 6 weeks ago by Antonio R. Franco • 4.3k
1
vote
4
answers
482
views
4
answers
Comment: C: What is in your opinion the current state-of-the-art sequencing platform for gen
... > Having short reads for polishing is encouraged for low coverage in long reads. Are you using HiFi or Long Reads sequencing ? If using HiFi... How the cycling redundancy in the sequencing reduces the truly useful coverage for the assembly ?. I mean that if Sequel II has an throughput of say 10 ...
written 11 weeks ago by Antonio R. Franco • 4.3k
0
votes
4
answers
482
views
4
answers
Answer: A: What is in your opinion the current state-of-the-art sequencing platform for gen
... A nice revision about modern scaffolding procedures [https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006994&type=printable][1] [1]: https://journals.plos.org/ploscompbiol/article/file?id=10.1371/journal.pcbi.1006994&type=printable ...
written 11 weeks ago by Antonio R. Franco • 4.3k

Latest awards to Antonio R. Franco

Popular Question 10 days ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Scholar 5 weeks ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Scholar 5 weeks ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Scholar 8 weeks ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Scholar 11 weeks ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Appreciated 12 weeks ago, created a post with more than 5 votes. For A: Must know algorithms before attending a bioinformatics interview
Good Answer 3 months ago, created an answer that was upvoted at least 5 times. For A: Can I assemble a Eukaryote RNA-Seq using my laptop?
Teacher 5 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Popular Question 5 months ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Popular Question 5 months ago, created a question with more than 1,000 views. For The NAR annual Web Server Issue is here..
Popular Question 13 months ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Popular Question 14 months ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Scholar 14 months ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Appreciated 14 months ago, created a post with more than 5 votes. For A: Must know algorithms before attending a bioinformatics interview
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Teacher 15 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Popular Question 17 months ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Popular Question 19 months ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Popular Question 21 months ago, created a question with more than 1,000 views. For How to get native bash in Windows 10
Appreciated 21 months ago, created a post with more than 5 votes. For A: Must know algorithms before attending a bioinformatics interview
Student 22 months ago, asked a question with at least 3 up-votes. For Is qPCR actually required for RNA-Seq validation ?
Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1143 users visited in the last hour