User: Antonio R. Franco

Reputation:
4,510
Status:
Trusted
Location:
Spain. Universidad de Córdoba
Last seen:
17 hours ago
Joined:
6 years ago
Email:
a*******@uco.es

Posts by Antonio R. Franco

<prev • 623 results • page 1 of 63 • next >
0
votes
1
answer
78
views
1
answers
Comment: C: Question: How to create a snakefile(snakemake) to align paired-end reads with bo
... Well done Daniel... good initiative ...
written 1 day ago by Antonio R. Franco4.5k
0
votes
0
answers
67
views
0
answers
Epigenome characterization with PacBio. Any experience ?
... I am interested in knowing about your experiences using Sequel PacBio sequencing to reveal the epigenome. We are currently sequencing the genome of a tree, and want to take adventage of this possibility. I am aware of the hacone/Agln code, but it seems to be useful for the ols RSII platform Is th ...
epigenome methylation pacbio written 16 days ago by Antonio R. Franco4.5k
0
votes
2
answers
2.0k
views
2
answers
Comment: C: Identifying CpG islands given a vcf variant file
... It seems that the link is broken or incomplete ...
written 21 days ago by Antonio R. Franco4.5k
1
vote
2
answers
127
views
2
answers
Answer: A: pathway analysis in plants
... If you have a nice KEGG annotation (get KO tags using [blastKoala][1]) and complement the annotations with several other different applications you can run KEGG Mapper, although not all pathways are included and it is almost certain that many genes will eventually not be annotated. There are R packa ...
written 9 weeks ago by Antonio R. Franco4.5k
0
votes
1
answer
191
views
1
answers
Comment: C: ChIP-seq analysis guidance for a beginner
... have you already obtained the sequences ?. I mean the places your protein bind ...
written 3 months ago by Antonio R. Franco4.5k
0
votes
1
answer
153
views
1
answers
Answer: A: GO enrichment analysis on my own gene list
... Try this web service [http://plantregmap.cbi.pku.edu.cn/go.php][1]. It contains many databases for GO enrichment analysis. You only need to select your specie and include the name of the genes to analyze. You can also download the databases [1]: http://plantregmap.cbi.pku.edu.cn/go.php ...
written 4 months ago by Antonio R. Franco4.5k
0
votes
0
answers
163
views
0
answers
Comment: C: bowtie2 version-2.1.0 to 2.2.9 installation in ubuntu
... Look for information about the **export** function of Unix/Linux to include new directories to your path ...
written 4 months ago by Antonio R. Franco4.5k
0
votes
2
answers
136
views
2
answers
Answer: A: Meaning of columns in TSV Kallisto mapped file
... Shame on me. After the latest update of LibreOffice, it does not handle the "." and the "," as before. I am spanish, and the "." are not meaning decimals. For that, we use colon ",". But in any case, LibreOffice is not doing a nice job anyway. If found 43.663, it converted to 43663. But afte ...
written 4 months ago by Antonio R. Franco4.5k
5
votes
2
answers
136
views
2
answers
Meaning of columns in TSV Kallisto mapped file
... I've been using the abundance.tsv files found after mapping with kallisto. You see 4 different columns but I am sort of confused about the actual values shown in these columns Can somebody enlight me?. I cannot find details on how these values are calculated in the Kallisto manual In particular. ...
tpm kallisto differential expression written 4 months ago by Antonio R. Franco4.5k
1
vote
1
answer
14
views
1
answers
Comment: C: technique to assemble mitochondria from whole genome
... Wondering how can you accomplish this when bacteria lacks of mitochondria ...
written 5 months ago by Antonio R. Franco4.5k

Latest awards to Antonio R. Franco

Great Question 9 weeks ago, created a question with more than 5,000 views. For Is qPCR actually required for RNA-Seq validation ?
Teacher 9 weeks ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Popular Question 9 weeks ago, created a question with more than 1,000 views. For Recommendations for bacterial data integration and/or System Biology
Scholar 4 months ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Popular Question 7 months ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Scholar 7 months ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Student 8 months ago, asked a question with at least 3 up-votes. For How would you discover the source of contaminant DNA ?
Popular Question 9 months ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Teacher 10 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Scholar 10 months ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Scholar 10 months ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Scholar 11 months ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Scholar 11 months ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Appreciated 11 months ago, created a post with more than 5 votes. For A: Must know algorithms before attending a bioinformatics interview
Good Answer 12 months ago, created an answer that was upvoted at least 5 times. For A: Can I assemble a Eukaryote RNA-Seq using my laptop?
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Popular Question 15 months ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Popular Question 15 months ago, created a question with more than 1,000 views. For The NAR annual Web Server Issue is here..
Popular Question 22 months ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Popular Question 23 months ago, created a question with more than 1,000 views. For Recommended coverage for methylome analysis
Scholar 23 months ago, created an answer that has been accepted. For A: How to find the Genes present in the sequence?
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Appreciated 23 months ago, created a post with more than 5 votes. For A: Must know algorithms before attending a bioinformatics interview
Teacher 2.0 years ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?
Teacher 2.0 years ago, created an answer with at least 3 up-votes. For A: is there any databse that provides the promoter of a specific gene?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 861 users visited in the last hour