User: al3n70rn

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al3n70rn110
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France
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Posts by al3n70rn

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Job: Post-Doc position for rare cancer neoepitope project (Paris, France)
... **The position** We are offering a 3-year post-doc position starting immediately which will be involved in the characterization of neoantigens in a cohort of tumors associated with rare neurological syndromes (paraneoplastic syndromes). This project is in collaboration with several French teams (Ly ...
R next-gen job rna-seq written 3 days ago by al3n70rn110
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Job: Chinese PhD student position in bioinformatics / computational biology at ICM (Paris, France). CSC / Sorbonne university doctoral program
... We are looking for a motivated PhD student in computational biology / bioinformatics who would join the experimental neuro-oncology lab at the Brain and spine Institute (ICM) in Paris, France. The candidate must be Chinese with a good English level (both spoken and written); French speaking is also ...
R next-gen job sequencing written 3.9 years ago by al3n70rn110
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Comment: C: Survival analysis of TCGA patients integrating gene expression (RNASeq) data
... @TriS thank you for this useful tutorial ! I think it would be better to change the lg2 function to: lg2 <- function(x){ x <- as.matrix(x) x <- t(apply(x,1,as.numeric)) res <- log2((x+1)) return(res) } ...
written 5.2 years ago by al3n70rn110
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Answer: A: How to Normalize the Microarray Data Obtained from ncbi?
... Have a look to GEOquery package.   ...
written 5.4 years ago by al3n70rn110
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Answer: A: Predicting LincRNA/LncRNA interaction with mRNA/protein of a coding gene
... Hi Senasplage, Have a look at catRAPID: http://s.tartaglialab.com/page/catrapid_group ...
written 5.6 years ago by al3n70rn110
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Forum: Spatial and temporal heterogeneity
... I think it would be really useful to have a list of packages / tools that allow to estimate tumor heterogeneity (spatial and temporal) and clonal analysis. Some examples:   TITAN : http://www.ncbi.nlm.nih.gov/pubmed/?term=25060187 MEDICC : http://www.ncbi.nlm.nih.gov/pubmed/24743184 THetA : htt ...
forum next-gen rna-seq written 5.7 years ago by al3n70rn110 • updated 5.7 years ago by Devon Ryan97k
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Answer: A: How to perform Gene Set Enrichment Analysis
... Have a look to GSEA documentation, is really straightforward: http://www.broadinstitute.org/gsea/doc/desktop_tutorial.jsp http://www.broadinstitute.org/cancer/software/gsea/wiki/index.php/Data_formats ...
written 5.7 years ago by al3n70rn110
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Answer: A: Consurf: Generating an image similar to the one that is given below
... Hi Venurah, Try this website and follow the great examples provided: http://bental.tau.ac.il/new_ConSurfDB/ ...
written 6.0 years ago by al3n70rn110

Latest awards to al3n70rn

Popular Question 2.4 years ago, created a question with more than 1,000 views. For Spatial and temporal heterogeneity
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Spatial and temporal heterogeneity

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