User: Amita

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Amita 0
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Posts by Amita

<prev • 6 results • page 1 of 1 • next >
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Comment: C: MODIFYING BLOSUM MATRIX in PSIBLAST/BLAST
... Hi Thanks for answering. But i dont wanna give already existing matrices. It is allowing for its existing ones not the one i created i.e. BLOSUM_MOD. here is the error: **BLAST query/options error: BLOSUM_MOD is not a supported matrix, supported matrices are: BLOSUM80 BLOSUM62 BLOSUM50 BLOSUM45 PA ...
written 2.0 years ago by Amita 0
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MODIFYING BLOSUM MATRIX in PSIBLAST/BLAST
... Hi Please help me out whether I can use my modified matrix with the standalone BLAST program or PSIBLAST program. If "YES" then how? Thanks in advance :) ...
blosum psiblast blast written 2.0 years ago by Amita 0 • updated 2.0 years ago by Santosh Anand4.7k
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Set gapopen and gapextend parameters for psiblast command line
... Hello! How can I set gapopen and gapextend parameters as Zero values in psiblast command line for proteins? ...
alignment blast written 3.2 years ago by Amita 0 • updated 3.2 years ago by abascalfederico1.1k
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Comment: C: bioinformatics related problems
... actually i downloaded Conserved Domain Database (CDD) using command wget, then untar the files as it was in tar format. but now i want to use that stand alone database further, but i am unable to do so.... ...
written 4.6 years ago by Amita 0
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Comment: C: bioinformatics related problems
... actually i downloaded Conserved Domain Database (CDD) using command wget, then untar the files as it was in tar format. but now i want to use that stand alone database further, but i am unable to do so....   ...
written 4.6 years ago by Amita 0
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(Closed) bioinformatics related problems
... hello friends i have downloaded blast database (rpsd; for conserved domain). but i am unable to us it. so plz can anyone tell me how i can use (untar files of cdd.tar.gz file). thanks :)   ...
blast written 4.6 years ago by Amita 0 • updated 4.6 years ago by Pierre Lindenbaum120k

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