User: dukecomeback
dukecomeback • 40
- Reputation:
- 40
- Status:
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- Location:
- China
- Last seen:
- 1 day, 8 hours ago
- Joined:
- 4 years, 7 months ago
- Email:
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Posts by dukecomeback
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... https://github.com/dukecomeback/bad-sequence-remover ...
written 9 weeks ago by
dukecomeback • 40
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... I'm not so sure if it has something to do with the header of the fasta sequences. Keeping the header of sequences in simple characters maybe help. ...
written 3 months ago by
dukecomeback • 40
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... I'm a little disappointed with Augustus, some times I know the hint is corrected, however no matter how hard I try, Augustus just do not obey the hint.
Feel won't love anymore. ...
written 3 months ago by
dukecomeback • 40
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... Hi, I'm quiet new to evolution, do you know why there is so many version of Jones matrices there? Thank you very much. ...
written 4 months ago by
dukecomeback • 40
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... Dear TrentGenomics, have you solved this? I'm also stucked here
...
written 10 months ago by
dukecomeback • 40
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... I think I've figure this out. It because that the sequences in the fasta file are output in one line. Some are too long for the exonerate.
Here is a perl script to re-type the fasta so each sequence would be output in multiple lines
#!/usr/bin/perl -w
use strict;
use Getopt::Long;
m ...
written 13 months ago by
dukecomeback • 40
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... I also run into this problem, don't know if you've figured it our? ...
written 13 months ago by
dukecomeback • 40
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... Hi, I want to cutoff the results by scores, but I hope there would be no length bias. ...
written 22 months ago by
dukecomeback • 40
• updated
22 months ago by
Jean-Karim Heriche ♦ 18k
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... Hi there,
When I run exonerate, I come across to this error: ** FATAL ERROR **: Unknown amino acid [U] exiting ...
Google lead me to this: https://github.com/nathanweeks/exonerate/issues/5, but the version I'm using (2.4.0) is supposed to be bug-fixed. So this link won't help me.
Do you have any ...
written 22 months ago by
dukecomeback • 40
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... I'm actually trying to build a genome annotation pipeline here. I hope to extract the overlap part from the two process to get some high quality genes.
...
written 24 months ago by
dukecomeback • 40
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