User: dukecomeback

gravatar for dukecomeback
dukecomeback40
Reputation:
40
Status:
New User
Location:
China
Last seen:
3 days, 10 hours ago
Joined:
6 years, 5 months ago
Email:
d***********@gmail.com

Posts by dukecomeback

<prev • 40 results • page 1 of 4 • next >
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Comment: C: SSPACE fasta output doesn't contain undefined nucleotides (NNNNNNN nucleotides
... Hi, I also run into this situation, have you found the reason, could you give me some suggestions? Thank you very much! ...
written 4 weeks ago by dukecomeback40
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Comment: C: Running splign just like NCBI
... Hi Reece, Thank you very much for your suggestions! ...
written 5 weeks ago by dukecomeback40
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Comment: C: Running splign just like NCBI
... Hi, I was wondering if you are keep using splign for transcript mapping. I also got the output from splign and could you kindly give me some suggestion on how to parse and filter it? Thank you very much. ...
written 5 weeks ago by dukecomeback40
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Answer: A: Downloading Sequences From Ensembl Using Ids
... Biomart restricts on species, for multiple id from different species, check here: https://rest.ensembl.org/documentation/info/sequence_id ...
written 7 months ago by dukecomeback40
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Comment: A: How to extract fasta sequences from assembled transcripts generated by Stringtie
... use gffread, you can find it in cufflink package ...
written 17 months ago by dukecomeback40
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Answer: A: Automagically Remove "Badly" Aligning Sequence From Multiple-Sequence Alignment
... https://github.com/dukecomeback/bad-sequence-remover ...
written 23 months ago by dukecomeback40
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Comment: C: GMAP error - Problem Sequence: TRINITY_DN422143_c0_g1_i1 (301 bp)
... I'm not so sure if it has something to do with the header of the fasta sequences. Keeping the header of sequences in simple characters maybe help. ...
written 2.0 years ago by dukecomeback40
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Answer: A: augustus output - how is the incompatible hint groups determined?
... I'm a little disappointed with Augustus, some times I know the hint is corrected, however no matter how hard I try, Augustus just do not obey the hint. Feel won't love anymore. ...
written 2.0 years ago by dukecomeback40
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Comment: C: Amino Acid matrices freely downloadable url
... Hi, I'm quiet new to evolution, do you know why there is so many version of Jones matrices there? Thank you very much. ...
written 2.1 years ago by dukecomeback40
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Comment: C: GMAP error - Problem Sequence: TRINITY_DN422143_c0_g1_i1 (301 bp)
... Dear TrentGenomics, have you solved this? I'm also stucked here ...
written 2.6 years ago by dukecomeback40

Latest awards to dukecomeback

Popular Question 4 months ago, created a question with more than 1,000 views. For combine or split, that's a question for transcriptome assembly
Popular Question 2.0 years ago, created a question with more than 1,000 views. For look for the old version blast (not blast+)
Popular Question 2.6 years ago, created a question with more than 1,000 views. For what is pairwise dN/dS used for?

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