User: dukecomeback
dukecomeback • 30
- Reputation:
- 30
- Status:
- New User
- Location:
- China
- Last seen:
- 4 days, 6 hours ago
- Joined:
- 2 years, 10 months ago
- Email:
- d***********@gmail.com
Posts by dukecomeback
<prev
• 28 results •
page 1 of 3 •
next >
0
votes
1
answer
92
views
1
answer
... Hi, I want to cutoff the results by scores, but I hope there would be no length bias. ...
written 15 days ago by
dukecomeback • 30
• updated
11 days ago by
Jean-Karim Heriche ♦ 12k
0
votes
0
answers
94
views
0
answers
... Hi there,
When I run exonerate, I come across to this error: ** FATAL ERROR **: Unknown amino acid [U] exiting ...
Google lead me to this: https://github.com/nathanweeks/exonerate/issues/5, but the version I'm using (2.4.0) is supposed to be bug-fixed. So this link won't help me.
Do you have any ...
written 18 days ago by
dukecomeback • 30
0
votes
1
answer
137
views
1
answers
... I'm actually trying to build a genome annotation pipeline here. I hope to extract the overlap part from the two process to get some high quality genes.
...
written 8 weeks ago by
dukecomeback • 30
0
votes
1
answer
137
views
1
answers
... thanks for that link, WouterDeCoster, it can be accessed. :) ...
written 8 weeks ago by
dukecomeback • 30
0
votes
1
answer
137
views
1
answers
... Thank you so much for your sharing, I really didn't know the whole TopHat being deprecated thing. ...
written 8 weeks ago by
dukecomeback • 30
0
votes
2
answers
4.5k
views
2
answers
... Thanks for your answer Damian.
I've built a whole pipeline base on your intelligence. I feed every software with repeat masked assembly sequences, so I didn't expected in the end I have to hint Augustus with RepeatMasker result again.
Anyway, so I guess the RepeatMasker hint file is adapted from th ...
written 8 weeks ago by
dukecomeback • 30
1
vote
1
answer
137
views
1
answer
... I combined 10 libraries before doing tophat+cufflinks and trinity+PASA assembling, end up with each process gave me hundred thousands of predicted transcripts. I believe there must be a lot of false positive. But would it be better if I run with each library respectively, then use some tools like cu ...
written 8 weeks ago by
dukecomeback • 30
• updated
8 weeks ago by
Rob ♦ 2.0k
0
votes
1
answer
555
views
1
answers
... Dear Mehmet,
I'm using AUGUSTUS 3.2.3, I also get this information: "Error: intron hint is too short" but no "error in add gene". I figure maybe I can just ignore it, do you think that's OK?
Sincerely,
Kang
...
written 8 weeks ago by
dukecomeback • 30
0
votes
2
answers
4.5k
views
2
answers
... Dear Damian,
In "8) Re-use PASA, Exonerate, SNAP, RepeatMasker as hints for Augustus and run gene predictions. The weighing of the hints is very subjective.", how can RepeatMasker output be hints for Augustus? Is there any chance that it's a typo?
Sincerely,
Kang ...
written 11 weeks ago by
dukecomeback • 30
0
votes
3
answers
4.6k
views
3
answers
Comment:
C: Fast Qseq To Fastq Converter
... After installing scons, by simply type scons in the qseq2fastq directory, you can get the executbable qseq2fastq.
>qseq2fastq -i seq_fold/* you will get the results. ...
written 3 months ago by
dukecomeback • 30
Latest awards to dukecomeback
Popular Question
18 months ago,
created a question with more than 1,000 views.
For How can I do the "fdr" mutiple test correction to the GO enrichment results from "TopGO" ?
Use of this site constitutes acceptance of our User
Agreement
and Privacy
Policy.
Powered by Biostar
version 2.3.0
Traffic: 1174 users visited in the last hour