User: rsharris
rsharris • 30
- Reputation:
- 30
- Status:
- New User
- Location:
- United States
- Last seen:
- 3 years, 9 months ago
- Joined:
- 4 years, 8 months ago
- Email:
- r*******@bx.psu.edu
Posts by rsharris
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... Cool, thanks!
Bob H
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written 3.8 years ago by
rsharris • 30
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... (I'm using DSK 2.0.6)
I don't understand the meaning of "solid" as it is used in the help listing. As in "solid kmers", "solidity", and "way to compute solids." I don't see the term used in the 2013 Bioinformatics manuscript. Can anyone clarify what this means?
A second question regards "minimi ...
written 3.8 years ago by
rsharris • 30
• updated
3.8 years ago by
Rayan Chikhi • 1.4k
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... Thanks Rayan,
I've made that change in my copy of the 2.0.6 simple_test.sh, and the tests all pass now.
I wasn't able to find 2.0.7 (and that's OK). I'd gotten 2.0.6 from http://minia.genouest.org/dsk and the update hasn't made it there yet. I then tried to find a DSK repository online but gave up ...
written 3.8 years ago by
rsharris • 30
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... I am new to DSK. The following may be the result of me failing to find some docs somewhere, so if that's the case please point me at them.
I've downloaded the linux binaries for 2.0.6 and found simple_test.sh so I thought I would try running it to see if the binaries will work on my machine. But I' ...
written 3.8 years ago by
rsharris • 30
• updated
3.8 years ago by
Rayan Chikhi • 1.4k
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... Lastz author here, came across this thread as part of a search for something else. For the sake of completeness... here's the scoop on softmasking and lastz
If you do nothing else, any lowercase nucleotide in your sequence file will be considered as soft-masked.
Additionally, lastz can perform so ...
written 4.7 years ago by
rsharris • 30
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