User: dhbradshaw

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dhbradshaw110
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110
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United States
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5 days, 4 hours ago
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3 years, 1 month ago
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Posts by dhbradshaw

<prev • 18 results • page 1 of 2 • next >
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Comment: C: Survey/Vote: If you could double the speed of any three commandline tools, which
... Combining your feedback with that of Chris Miller and others points with a fairly high signal toward variant calling and annotation. So I'm on board. And yes, please! I do indeed need introductory materials on everything variant related. ...
written 6 days ago by dhbradshaw110
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Comment: C: Survey/Vote: If you could double the speed of any three commandline tools, which
... I haven't claimed and will not claim to be a master developer. But I don't think that's what's called for. What's called for is someone who will focus on a specific problem, read and get advice, think through the algorithm candidates and the effects of scaling on speed, make measurements, and iter ...
written 10 days ago by dhbradshaw110
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Comment: C: Survey/Vote: If you could double the speed of any three commandline tools, which
... That path makes sense and is interesting. ...
written 10 days ago by dhbradshaw110
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Comment: C: Survey/Vote: If you could double the speed of any three commandline tools, which
... Can you annotate this list a little bit for outsiders like me? Also, I'm trying to understand priorities here since it looks like 1 should be the priority but then you seem to call out the last 2. Or are you saying that there are other de novo tools that you would list as well? ...
written 11 days ago by dhbradshaw110
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Comment: C: Survey/Vote: If you could double the speed of any three commandline tools, which
... Really interesting code and applications here. MHC binding application is broken form me -- the url needs the leading http://. ...
written 11 days ago by dhbradshaw110
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Comment: C: Survey/Vote: If you could double the speed of any three commandline tools, which
... Thanks for these two leads. ...
written 11 days ago by dhbradshaw110
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Comment: C: Survey/Vote: If you could double the speed of any three commandline tools, which
... Rust -- I'd probably write anything over from scratch. So maybe smaller is better to start :-D ...
written 11 days ago by dhbradshaw110
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Comment: C: Survey/Vote: If you could double the speed of any three commandline tools, which
... I don't have anything on my list; that's the problem! I'm a physicist turned coder (like half the world, it seems). Outside of Rosalind and Coursera, I've never done any bioinformatics. But I've learned that I like speeding things up and I thought it would be fun to find out where I could make ...
written 11 days ago by dhbradshaw110
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Comment: C: Survey/Vote: If you could double the speed of any three commandline tools, which
... Architecture speedups are just as interesting and challenging as code speedups. So maybe I/O bound applications are worth listing as well. ...
written 11 days ago by dhbradshaw110
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Forum: Survey/Vote: If you could double the speed of any three commandline tools, which three would they be?
... Any thoughts? I'm posting here to look for bioinformatics tools that would benefit from a speed up. But if it's more general command-line tools that tend to be bottlenecks, list those too. If you want to list more or less than three, that's fine too, of course. If possible, prioritize them in or ...
next-gen forum sequencing alignment rna-seq blast written 12 days ago by dhbradshaw110 • updated 10 days ago by Puli Chandramouli Reddy90

Latest awards to dhbradshaw

Appreciated 7 days ago, created a post with more than 5 votes. For Do you know of any open source bioinformatics machine learning projects?
Appreciated 22 months ago, created a post with more than 5 votes. For Do you know of any open source bioinformatics machine learning projects?
Student 22 months ago, asked a question with at least 3 up-votes. For Do you know of any open source bioinformatics machine learning projects?

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