User: Yannick Wurm

gravatar for Yannick Wurm
Yannick Wurm2.3k
Reputation:
2,310
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Location:
Queen Mary University London
Website:
http://yannick.poulet....
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Last seen:
1 month, 3 weeks ago
Joined:
10 years, 5 months ago
Email:
y*****@qmul.ac.uk

Bioinformaticist studying the evolution of ant societies. Some recent stuff:

enjoy NGS, ruby & bioconductor

Posts by Yannick Wurm

<prev • 161 results • page 1 of 17 • next >
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Comment: C: VCF files: Change Chromosome Notation
... the awk-based answers below are confusing. Just use `bcftools annotate --rename-chrs` as highlighted by @jerviedog . This will also work with appropriate subsets of NCBI's assembly_report.txt files ...
written 8 weeks ago by Yannick Wurm2.3k
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Comment: C: local web BLAST server
... Thanks @Jake Warner for mentioning sequenceserver. @Ric, please let us know if you encounter any challenges. ...
written 11 weeks ago by Yannick Wurm2.3k
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Comment: C: How to start with blast and a local database
... Thanks @colindaven for recommending [sequenceserver as a BLAST interface](http://sequenceserver.com). Hi @gbl1 - it looks like you struggled with one of the other recommendations as well. If you can provide some details as to how the installation failed, perhaps we can help you get sequenceserver r ...
written 11 weeks ago by Yannick Wurm2.3k
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Answer: A: Embedding NCBI standalone Blast or SequenceServer in a Website
... Apologies for the slow response - yes it is easy to integrate sequencserver as part of a bigger websites. (e.g. via ngnix). This is documented at https://sequenceserver.com/ under advanced configuration ...
written 13 months ago by Yannick Wurm2.3k
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Answer: A: Generating Web BLAST output from local BLAST
... Shameless plug: You can also use http://sequenceserver.com to have something with more visualization flexibility ...
written 14 months ago by Yannick Wurm2.3k
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Job: BBSRC PhD studentship for UK citizen/resident: Data science & machine learning for genomic analysis
... We have an exciting 4-year bioinformatics PhD position open through the London BBSRC LiDO Doctoral Training Programme. [Apply by 5pm July 12th here at LIDO to start in September.][1] A description of the project is at the link below. It is highly interdisciplinary - no need to already be able to u ...
job genomics written 2.1 years ago by Yannick Wurm2.3k
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Job: Postdoc: Population & comparative genomics of bumblebees, Queen Mary University, London, UK
... Bees and other pollinators are essential for preserving biodiversity and ensuring agricultural yields. Reports of their declines worldwide are thus concerning. We use molecular tools to understand how pollinators are affected by changing environments and their abilities to cope with such changes. W ...
population genomics molecular evolution job written 2.2 years ago by Yannick Wurm2.3k • updated 2.2 years ago by genomax87k
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Comment: C: Reliable Fastq compression programs
... So what did you settle on? ...
written 3.0 years ago by Yannick Wurm2.3k
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Comment: C: Tool to generate a chain file from an agp file
... Hi - did you figure this out? ...
written 3.3 years ago by Yannick Wurm2.3k
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Answer: A: Sequenceserver: Easily Deploy A Custom, User-Friendly Blast Webserver
... There have been a bunch of revisions/improvements since those posts. My writing today is to announce our pre-publication manuscript: Biorxiv: http://dx.doi.org/10.1101/033142 ##Sequenceserver: a modern graphical user interface for custom BLAST databases Anurag Priyam, Ben J Woodcroft, Vivek Rai, ...
written 4.6 years ago by Yannick Wurm2.3k • updated 8 months ago by RamRS28k

Latest awards to Yannick Wurm

Great Question 4 months ago, created a question with more than 5,000 views. For Automagically Remove "Badly" Aligning Sequence From Multiple-Sequence Alignment
Great Question 13 months ago, created a question with more than 5,000 views. For Big Ass Servers & Storage
Great Question 20 months ago, created a question with more than 5,000 views. For Big Ass Servers & Storage
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Database of genes with manually curated/fixed sequences?
Popular Question 2.1 years ago, created a question with more than 1,000 views. For 454Newblermetrics.Txt Format
Popular Question 2.1 years ago, created a question with more than 1,000 views. For NextSeq Error distribution?
Popular Question 2.8 years ago, created a question with more than 1,000 views. For 454Newblermetrics.Txt Format
Appreciated 2.8 years ago, created a post with more than 5 votes. For A: What Is Your Experience With Gmod Tools Or Alternatives?
Popular Question 2.8 years ago, created a question with more than 1,000 views. For Sequenceserver: Easily Deploy A Custom, User-Friendly Blast Webserver
Student 2.8 years ago, asked a question with at least 3 up-votes. For Database of genes with manually curated/fixed sequences?
Great Question 3.0 years ago, created a question with more than 5,000 views. For Programmatically Retrieve Info About Articles Citing My Article
Appreciated 3.0 years ago, created a post with more than 5 votes. For A: What Is Your Experience With Gmod Tools Or Alternatives?
Appreciated 3.1 years ago, created a post with more than 5 votes. For A: What Is Your Experience With Gmod Tools Or Alternatives?
Popular Question 3.8 years ago, created a question with more than 1,000 views. For 454Newblermetrics.Txt Format
Appreciated 3.8 years ago, created a post with more than 5 votes. For A: What Is Your Experience With Gmod Tools Or Alternatives?
Great Question 3.9 years ago, created a question with more than 5,000 views. For How To Download All Est Sequences For Organism Xx From Ncbi?
Popular Question 4.2 years ago, created a question with more than 1,000 views. For 454Newblermetrics.Txt Format
Epic Question 4.3 years ago, created a question with more than 10,000 views. For Duplicate Paired-End Illumina Reads
Great Question 4.5 years ago, created a question with more than 5,000 views. For Duplicate Paired-End Illumina Reads
Popular Question 4.5 years ago, created a question with more than 1,000 views. For 454Newblermetrics.Txt Format
Popular Question 4.5 years ago, created a question with more than 1,000 views. For 454Newblermetrics.Txt Format
Popular Question 4.6 years ago, created a question with more than 1,000 views. For 454Newblermetrics.Txt Format
Popular Question 4.6 years ago, created a question with more than 1,000 views. For 454Newblermetrics.Txt Format
Popular Question 4.7 years ago, created a question with more than 1,000 views. For 454Newblermetrics.Txt Format
Popular Question 4.7 years ago, created a question with more than 1,000 views. For 454Newblermetrics.Txt Format

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