User: Yannick Wurm

gravatar for Yannick Wurm
Yannick Wurm2.3k
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Location:
Queen Mary University London
Website:
http://yannick.poulet.org
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Last seen:
3 weeks, 2 days ago
Joined:
9 years, 4 months ago
Email:
y*****@qmul.ac.uk

Bioinformaticist studying the evolution of ant societies. Some recent stuff:

enjoy NGS, ruby & bioconductor

Posts by Yannick Wurm

<prev • 158 results • page 1 of 16 • next >
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Answer: A: Embedding NCBI standalone Blast or SequenceServer in a Website
... Apologies for the slow response - yes it is easy to integrate sequencserver as part of a bigger websites. (e.g. via ngnix). This is documented at https://sequenceserver.com/ under advanced configuration ...
written 25 days ago by Yannick Wurm2.3k
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Answer: A: Generating Web BLAST output from local BLAST
... Shameless plug: You can also use http://sequenceserver.com to have something with more visualization flexibility ...
written 5 weeks ago by Yannick Wurm2.3k
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Job: BBSRC PhD studentship for UK citizen/resident: Data science & machine learning for genomic analysis
... We have an exciting 4-year bioinformatics PhD position open through the London BBSRC LiDO Doctoral Training Programme. [Apply by 5pm July 12th here at LIDO to start in September.][1] A description of the project is at the link below. It is highly interdisciplinary - no need to already be able to u ...
job genomics written 12 months ago by Yannick Wurm2.3k
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Job: Postdoc: Population & comparative genomics of bumblebees, Queen Mary University, London, UK
... Bees and other pollinators are essential for preserving biodiversity and ensuring agricultural yields. Reports of their declines worldwide are thus concerning. We use molecular tools to understand how pollinators are affected by changing environments and their abilities to cope with such changes. W ...
population genomics molecular evolution job written 14 months ago by Yannick Wurm2.3k • updated 14 months ago by genomax69k
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Comment: C: Reliable Fastq compression programs
... So what did you settle on? ...
written 23 months ago by Yannick Wurm2.3k
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Comment: C: Tool to generate a chain file from an agp file
... Hi - did you figure this out? ...
written 2.2 years ago by Yannick Wurm2.3k
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Answer: A: Sequenceserver: Easily Deploy A Custom, User-Friendly Blast Webserver
... There have been a bunch of revisions/improvements since those posts. My writing today is to announce our pre-publication manuscript:  Biorxiv:  http://dx.doi.org/10.1101/033142 Sequenceserver: a modern graphical user interface for custom BLAST databases Anurag Priyam, Ben J Woodcroft, Vivek Rai, ...
written 3.6 years ago by Yannick Wurm2.3k
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Comment: C: What Is A Good Web Front End For (Blast) Homology Search?
... (FYI there's been quite a few updates since this...) ...
written 3.7 years ago by Yannick Wurm2.3k
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Comment: C: Database of genes with manually curated/fixed sequences?
... Thanks Andrzej - this is v helpful. I didn't realize this distinction. Do you know whether the 2 types of submissions people sequencing a new genome make would be similarly differentiated? ...
written 3.8 years ago by Yannick Wurm2.3k
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Database of genes with manually curated/fixed sequences?
... When working with gene sequences from an understudied species, it can be challenging to know whether the gene prediction model is correct. Methods for determining this include comparisons to other "known" gene predictions as well as RNAseq data - manually or with the help of tools like GeneValidator ...
similarity gene prediction homology database written 3.8 years ago by Yannick Wurm2.3k • updated 3.8 years ago by a.zielezinski8.7k

Latest awards to Yannick Wurm

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Appreciated 20 months ago, created a post with more than 5 votes. For A: What Is Your Experience With Gmod Tools Or Alternatives?
Student 20 months ago, asked a question with at least 3 up-votes. For Database of genes with manually curated/fixed sequences?
Great Question 23 months ago, created a question with more than 5,000 views. For Programmatically Retrieve Info About Articles Citing My Article
Appreciated 23 months ago, created a post with more than 5 votes. For A: What Is Your Experience With Gmod Tools Or Alternatives?
Appreciated 24 months ago, created a post with more than 5 votes. For A: What Is Your Experience With Gmod Tools Or Alternatives?
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