... How is this different from having to pay fees to read articles that contain a large chunk of per-established information and often public data?
Companies like Geneious asking $1000 licenses for a GUI around CC licensed publicly available tools that don't see a dime.
People writing books containi ...
Potential reason for this error...
Something could be wrong with your file paths, are you sure all the files are actually in the location from where you are trying to start the tool?
It seems the error traces back to the Illumina clipper, so make sure 'adapters/TruSeq3-PE.fa' is the correct ...
... Several methods I've seen so far.
Method 1: Gene array tree
Concat all the genes into one sequence... this is an oldschool trick and only works for genes that have SNPs and one or two indels, but not genes that have vastly different sizes
Method 2: Summary tree
You can build individual trees for ...
... Hi there, been using Roary for 3 years now... awesome tool!
I'm just curious how it is that all the plots it produces aren't single values?
For example... the "Number of unique genes" plot should just be a fixed single value of the number of unique genes am i right? So how come it's a collection of ...
written 19 months ago by
Lesley Sitter • 540
19 months ago by
Joe ♦ 18k
... Keep in mind that most of the people here (bioinformaticians) are Linux based, and there is a good reason we stick to Linux for this type of stuff (windows based software are often unstable when dealing with this type of data sets).... BUT!
It's not my favorite bec ...
... The graphs produced by K-mer genie are specificity vs sensitivity comparisons... depending on the kmer size you get a set of sequences that are unique vs the total amount of unique sequences.
If you have too little unique sequences, you can't expand your contigs... if they aren't unique enough you'l ...