User: jivarajivaraj

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Posts by jivarajivaraj

<prev • 88 results • page 1 of 9 • next >
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Comment: C: Adding column annotation to heatmap using Complexheatmap
... Sorry Kevin, if I have two time points of single cell RNA-seq data, in time point 1 cells can be clustered to 2 clusters, Lets say for example in time point 1, cell1, cell9, .. (99 cells) placed in sub cluster 1, cell4, cell12,,, (34 cells) in sub cluster 2. I have also 2 sub-clusters for time poin ...
written 13 days ago by jivarajivaraj40
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Selecting the highest Pearson correlation coefficient of two matrices
... Hi, I have two matrices of normalised gene expression values from single cell data from two time points. In rows I have the same genes but cells in each matrix is not same(different time point). In figure 2 C of this paper https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5668937/ authors say they have ...
R single cell rna-seq correlation written 13 days ago by jivarajivaraj40
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Comment: C: Extracting rows based on specific string in a column
... But all comes from heart, for example genomax I never seen to close abruptly he tries to help if not leave me with another members does not matter the country I am but I believe for hours I am searching in google GENE ID Gene Name Synonyms Gene products DDB_G0267364 DDB_G0267364_RTE ...
written 18 days ago by jivarajivaraj40
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Comment: C: Extracting rows based on specific string in a column
... I also wonder why you are always rushing to close the posts more than another moderators? May be sometimes later somebody wants to help, I have already searched StackOverflow and Google and for sure if my answer was there I did not create a question here ...
written 18 days ago by jivarajivaraj40
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Comment: C: Extracting rows based on specific string in a column
... Sorry but I have already tried some links > dat[dat$products %like% "transcription factor",] [1] GENE ID Gene products <0 rows> (or 0-length row.names) while I know there are 170 transcription factor string in products column Sorry whatever I am trying to re ...
written 18 days ago by jivarajivaraj40
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Comment: C: Extracting rows based on specific string in a column
... In products column for some gene there is transcription factor phrase/string ...
written 18 days ago by jivarajivaraj40
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(Closed) Extracting rows based on specific string in a column
... Hi, I have this file > head(dat) GENE ID Gene products 1 DDB_G0267364 Skipper GAG-PRO 2 DDB_G0267372 TRE5-A ORF1 3 DDB_G0267380 acetylornithine deacetylase 4 DDB_G0267304 DIRS ...
gene R genome written 18 days ago by jivarajivaraj40
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Comment: C: A function for having a multiway intersection
... sorry says that Error: object 'i' not found I have a vector of characters for each time point putting them in list and i run your function > str(sets) List of 9 > ...
written 8 weeks ago by jivarajivaraj40
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Comment: C: A function for having a multiway intersection
... Thank you. The number of genes in each of these lists are not equal. For example there are 630 common genes between h2 and h4 but i have 1143 genes in h2 list and 768 genes in h4 list , so h2 vs h4 would be 630/1143 and h4 vs h2 would be 630/768. That would would be great if i have a matrix or plot ...
written 8 weeks ago by jivarajivaraj40 • updated 8 weeks ago by Ram17k
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A function for having a multiway intersection
... Hi, I have time points , I have differentially expressed genes for each possible combination of these time points too. So that etc. How I can have a code to extract common genes from each possible pairwise combinations of these lists? ...
R venn diagram intersection written 8 weeks ago by jivarajivaraj40

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Popular Question 16 months ago, created a question with more than 1,000 views. For producing suited input for IGV by BEDTOOLS toolkit
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Popular Question 16 months ago, created a question with more than 1,000 views. For i cant download and install bowtie2-2.2.4-mingw-win64.zip
Popular Question 22 months ago, created a question with more than 1,000 views. For hello i know i must accept that im a stupid
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