User: nehagoel24march

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Posts by nehagoel24march

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Comment: C: Hybrid Assembly Transcriptome - Hiseq And 454
... I would like to know how to do meta assembly by using the assemblies through Trinity and newbler of Roche transcriptome data. I used CAP3 so I followed the following commands. Both files have different headers and parameters. cat trinity.fasta newbler.fasta > final.fasta ./cap3 final.fas ...
written 5.8 years ago by nehagoel24march0 • updated 11 months ago by RamRS30k
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Comment: C: Obtaining contig stats from Velvet+Oases De Novo Assembly
... Dear all, I ran the ./oases and generated Transcript.fa. May i know the statistics of Transcripts.fa as we got in Trinity . it yes then guide me how it will calculatated. ...
written 5.9 years ago by nehagoel24march0
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Answer: A: Getting zero length transcriptome with Velvet-Oases
... I download velvet_1.2.10 in Downloads folder and untar it., make after that i set the categories and maxkmerlength through make command. After that I ran the command velveth then it was displaying The program 'velveth' is currently not installed. You can install it by typing: sudo apt-get install ...
written 5.9 years ago by nehagoel24march0 • updated 5.9 years ago by RamRS30k
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Comment: C: Getting zero length transcriptome with Velvet-Oases
... ./velveth dir 31 -fastq reads.fq ./velvetg dir/ -read_trkg yes As the output contig.fa (13MB) and sequencs.fa (250MB) when i am executing the command ./oases_pipeline.py -m 21 -M 23 -d dir/ (Here i gave velvet directory path) then it gives the following error: Could not find Velvet Make s ...
written 5.9 years ago by nehagoel24march0 • updated 5.9 years ago by RamRS30k
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Getting zero length transcriptome with Velvet-Oases
... Respected Sir/ Madam,   I am Neha Goel from India. I am working on transcriptome sequence data from 454seq. I have 10Mbps data, I preprocessed (Quality filter/ Quality Trimming) and obtained the filtered file . For Denovo assembly I chase the velvet-Oases. I installed the velvet and it gave the con ...
rna-seq oases written 5.9 years ago by nehagoel24march0
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Answer: A: Message "Splay Table Destroyed" In Velvet
... I am working on transcriptome sequence data from 454seq. I have 10Mbps data, I preprocessed (Quality filter/ Quality Trimming) and obtained the filtered file . For Denovo assembly I chase the velvet-Oases. I installed the velvet and it gave the contig.fa. Now I ran the command for Oases. ./oases 'd ...
written 5.9 years ago by nehagoel24march0

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Popular Question 5.8 years ago, created a question with more than 1,000 views. For Getting zero length transcriptome with Velvet-Oases

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