User: ndp

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ndp40
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Posts by ndp

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Comment: C: scaffolds and contigs SPADES
... Thanks for your email! I know the values are different in the GAGE-B study, but they are only slightly different whereas for most of the other tools the N50 for the scaffolds is much bigger (which is what you would intuitively expect and is the whole point of scaffolding). In this case I don't see ...
written 6.0 years ago by ndp40
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scaffolds and contigs SPADES
... Hi, Can anybody tell me how contigs and scaffolds from SPADEs differ?  Mine appear to be identical and even in the GAGE-B study they are identical.  Other assemblers produce scaffolds with higher N50s, but SPADES doesn't.  Are they the same? Thanks! NP         ...
scaffolds spades written 6.0 years ago by ndp40 • updated 6.0 years ago by anton40

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