Moderator: Leonor Palmeira

gravatar for Leonor Palmeira
Leonor Palmeira3.6k
Reputation:
3,640
Status:
Trusted
Location:
Liège, Belgium
Website:
http://sites.google.co...
Last seen:
1 week, 2 days ago
Joined:
7 years, 8 months ago
Email:
l********@chu.ulg.ac.be

Scientist | Senior Bioinformatician @ CHU Liege, Belgium

 

Posts by Leonor Palmeira

<prev • 300 results • page 1 of 30 • next >
0
votes
0
answers
555
views
0
answers
Comment: A: elPrep 4.0.0, a high-performance drop-in replacement tool for GATK4/Picard/SAMto
... The original [elPrep paper](https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0132868) describes the sorting and duplicate marking implementations. Is there a paper in preparation describing the BQSR implementation and the new features? ...
written 22 days ago by Leonor Palmeira3.6k
0
votes
0
answers
555
views
0
answers
Comment: C: elPrep 4.0.0, a high-performance drop-in replacement tool for GATK4/Picard/SAMto
... Thanks for the API documentation link! ...
written 22 days ago by Leonor Palmeira3.6k
2
votes
0
answers
555
views
0
answers
Comment: C: elPrep 4.0.0, a high-performance drop-in replacement tool for GATK4/Picard/SAMto
... Hi, this is a great tool! I feel you forgot to mention elPrep's modularity by design. Adding/removing filters to our elPrep call to suit our pipeline needs is done in a breeze. This allows us to use it in all sorts of NGS pipelines, and not just the GATK's Best Practices for variant calling. I also ...
written 23 days ago by Leonor Palmeira3.6k
0
votes
0
answers
295
views
0
answers
Job: Bioinformatician - R&D and Production Scientist (Liege, Belgium)
... **Your Profile** Master/PhD, preferably with 2 to 5 years experience as a bioinformatician in the field of genomics WES and WGS analysis. **Qualifications and experience** - You have a deep knowledge and proficiency in the development of bioinformatics tools for NGS data analysis - You have a s ...
genome ngs medicine job diagnostics written 3 months ago by Leonor Palmeira3.6k • updated 3 months ago by Devon Ryan86k
0
votes
0
answers
522
views
0
answers
Job: Scientist in Bioinformatics for a genomic medicine project, GIGA Research Center, University of Liege, Liege, Belgium
... The GIGA Research Center (http://www.giga.ulg.ac.be) is a multidisciplinary research group at the University of Liège aiming at developing applied genomics and proteomics research programs. The CHU Liège is a University Hospital active in all the aspects of health care, including human genetics, onc ...
bioinformatics ngs medicine job diagnostics written 8 months ago by Leonor Palmeira3.6k • updated 8 months ago by genomax58k
1
vote
0
answers
557
views
0
answers
Job: Post-doctoral researcher for a genomic medicine project, University of Liege, Liege, Belgium
... The GIGA (http://www.giga.ulg.ac.be) is seeking for a post-doctoral researcher for a genomic medicine project. The GIGA Research Center is a multidisciplinary research group at the University of Liège aiming at developing applied genomics and proteomics research programs. The CHU Liège ...
bioinformatics next-gen medicine job diagnostics written 11 months ago by Leonor Palmeira3.6k • updated 11 months ago by genomax58k
0
votes
0
answers
1.1k
views
0
answers
Comment: C: BamUtil for Base Qual Recalibration
... This question is now 2.5 years old... With some hope : has anyone some information on performances of bamUtil compared to BQSR (not time performances but benchmarking or such) ? I would greatly appreciate any pointers! ...
written 18 months ago by Leonor Palmeira3.6k
2
votes
0
answers
1.2k
views
0
answers
Job: Bioinformatician | NGS Diagnostic Testing @ Dept. Hum. Gen., Liege Univ. Hospital, BELGIUM
... The department of Human Genetics of the University Hospital of Liège is looking for a bioinformatician who is interested in designing, developing, and managing data analysis solutions that have direct impact on Medical management of patients. Our department develops NGS diagnostics tests in the fi ...
data science bioinformatics ngs job diagnostics written 3.4 years ago by Leonor Palmeira3.6k
0
votes
2
answers
8.7k
views
2
answers
Comment: C: Retrieve Subset Positions Vcf File
... @Rm: You are right. Now that's a strange move... The latest 1.1 version I have just downloaded (tabix is now part of HTSlib) doesn't allow for the -B option although the manual (again out-of-date) still indicates it does: http://www.htslib.org/doc/tabix-1.1.html ...
written 4.0 years ago by Leonor Palmeira3.6k
0
votes
2
answers
8.7k
views
2
answers
Comment: C: Retrieve Subset Positions Vcf File
... @Rm: can you tell us where you have seen this? The online manual is outdated and from version 0.1.1. I have version 0.2.5 (r964) with the option. It wouldn't make much sense to me to remove that option...   ...
written 4.0 years ago by Leonor Palmeira3.6k

Latest awards to Leonor Palmeira

Great Question 5 months ago, created a question with more than 5,000 views. For Is there a tool to transform GenomeStudio genotype format to VCF?
Popular Question 18 months ago, created a question with more than 1,000 views. For Amino Acid Change To Genomic Location: using 'backlocate'
Good Answer 18 months ago, created an answer that was upvoted at least 5 times. For A: Which Journals Should I Follow If I Write Software And Algorithms In Computation
Appreciated 18 months ago, created a post with more than 5 votes. For A: Woman Sequenced With 454 Technology?
Appreciated 18 months ago, created a post with more than 5 votes. For A: K-Mer Analysis
Popular Question 21 months ago, created a question with more than 1,000 views. For Amino Acid Change To Genomic Location: using 'backlocate'
Popular Question 3.4 years ago, created a question with more than 1,000 views. For Is there a tool to transform GenomeStudio genotype format to VCF?
Teacher 3.4 years ago, created an answer with at least 3 up-votes. For A: Find Papers That Use A Given Pdb Structure
Commentator 3.4 years ago, created a comment with at least 3 up-votes. For C: Thoughts On Galaxy For Next Generation Sequence Data Analysis
Popular Question 3.5 years ago, created a question with more than 1,000 views. For Ngs Course Medical Genomics, Leuven, 17-20 September 2013
Popular Question 3.5 years ago, created a question with more than 1,000 views. For How To Force 'Bwa Samse' To Output Multiple Hits In .Sam Format?
Teacher 3.6 years ago, created an answer with at least 3 up-votes. For A: Find Papers That Use A Given Pdb Structure
Appreciated 3.7 years ago, created a post with more than 5 votes. For A: Woman Sequenced With 454 Technology?
Teacher 4.0 years ago, created an answer with at least 3 up-votes. For A: Find Papers That Use A Given Pdb Structure
Teacher 4.3 years ago, created an answer with at least 3 up-votes. For A: Find Papers That Use A Given Pdb Structure
Scholar 4.4 years ago, created an answer that has been accepted. For A: How To Force 'Bwa Samse' To Output Multiple Hits In .Sam Format?
Autobiographer 4.6 years ago, has more than 80 characters in the information field of the user's profile.
Centurion 4.6 years ago, created 100 posts.
Voter 4.6 years ago, voted more than 100 times.
Supporter 4.6 years ago, voted at least 25 times.
Guru 4.6 years ago, received more than 100 upvotes.
Commentator 5.3 years ago, created a comment with at least 3 up-votes. For C: Converting Gene Predictions In Glimmer To Protein Sequences.
Appreciated 5.3 years ago, created a post with more than 5 votes. For C: Converting Gene Predictions In Glimmer To Protein Sequences.
Teacher 5.7 years ago, created an answer with at least 3 up-votes. For A: How To Plot A Circular Genome Map?

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1672 users visited in the last hour