Moderator: Leonor Palmeira
Leonor Palmeira ♦ 3.6k
- Reputation:
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- Location:
- Liège, Belgium
- Website:
- http://sites.google.co...
- Last seen:
- 1 week, 2 days ago
- Joined:
- 7 years, 8 months ago
- Email:
- l********@chu.ulg.ac.be
Scientist | Senior Bioinformatician @ CHU Liege, Belgium
Posts by Leonor Palmeira
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... The original [elPrep paper](https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0132868) describes the sorting and duplicate marking implementations.
Is there a paper in preparation describing the BQSR implementation and the new features? ...
written 22 days ago by
Leonor Palmeira ♦ 3.6k
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... Thanks for the API documentation link! ...
written 22 days ago by
Leonor Palmeira ♦ 3.6k
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... Hi, this is a great tool! I feel you forgot to mention elPrep's modularity by design. Adding/removing filters to our elPrep call to suit our pipeline needs is done in a breeze. This allows us to use it in all sorts of NGS pipelines, and not just the GATK's Best Practices for variant calling. I also ...
written 23 days ago by
Leonor Palmeira ♦ 3.6k
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... **Your Profile**
Master/PhD, preferably with 2 to 5 years experience as a bioinformatician in the field of genomics WES and WGS analysis.
**Qualifications and experience**
- You have a deep knowledge and proficiency in the development of bioinformatics tools for NGS data analysis
- You have a s ...
written 3 months ago by
Leonor Palmeira ♦ 3.6k
• updated
3 months ago by
Devon Ryan ♦ 86k
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... The GIGA Research Center (http://www.giga.ulg.ac.be) is a multidisciplinary research group at the University of Liège aiming at developing applied genomics and proteomics research programs. The CHU Liège is a University Hospital active in all the aspects of health care, including human genetics, onc ...
written 8 months ago by
Leonor Palmeira ♦ 3.6k
• updated
8 months ago by
genomax ♦ 58k
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... The GIGA (http://www.giga.ulg.ac.be) is seeking for a post-doctoral researcher for a genomic medicine project.
The GIGA Research Center is a multidisciplinary research group at the University of Liège aiming at developing applied genomics and proteomics research programs. The CHU Liège ...
written 11 months ago by
Leonor Palmeira ♦ 3.6k
• updated
11 months ago by
genomax ♦ 58k
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... This question is now 2.5 years old... With some hope : has anyone some information on performances of bamUtil compared to BQSR (not time performances but benchmarking or such) ? I would greatly appreciate any pointers! ...
written 18 months ago by
Leonor Palmeira ♦ 3.6k
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... The department of Human Genetics of the University Hospital of Liège is looking for a bioinformatician who is interested in designing, developing, and managing data analysis solutions that have direct impact on Medical management of patients.
Our department develops NGS diagnostics tests in the fi ...
written 3.4 years ago by
Leonor Palmeira ♦ 3.6k
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... @Rm: You are right. Now that's a strange move... The latest 1.1 version I have just downloaded (tabix is now part of HTSlib) doesn't allow for the -B option although the manual (again out-of-date) still indicates it does: http://www.htslib.org/doc/tabix-1.1.html
...
written 4.0 years ago by
Leonor Palmeira ♦ 3.6k
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... @Rm: can you tell us where you have seen this? The online manual is outdated and from version 0.1.1. I have version 0.2.5 (r964) with the option. It wouldn't make much sense to me to remove that option...
...
written 4.0 years ago by
Leonor Palmeira ♦ 3.6k
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