Moderator: Leonor Palmeira

gravatar for Leonor Palmeira
Leonor Palmeira3.7k
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Location:
Liège, Belgium
Website:
http://sites.google.co...
Last seen:
2 months, 3 weeks ago
Joined:
8 years, 8 months ago
Email:
l********@chu.ulg.ac.be

Scientist | Senior Bioinformatician @ CHU Liege, Belgium

 

Posts by Leonor Palmeira

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Job: Scientist in Bioinformatics for a genomic medicine project
... **Who we are** The GIGA Research Center is a multidisciplinary research group at the University of Liège aiming at developing applied genomics and proteomics research programs. The CHU Liège is a University Hospital active in all the aspects of health care, including human genetics, oncology, and m ...
genome ngs medicine job written 5 months ago by Leonor Palmeira3.7k
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Comment: A: elPrep 4.0.0, a high-performance drop-in replacement tool for GATK4/Picard/SAMto
... The original [elPrep paper](https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0132868) describes the sorting and duplicate marking implementations. Is there a paper in preparation describing the BQSR implementation and the new features? ...
written 12 months ago by Leonor Palmeira3.7k
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Comment: C: elPrep 4.0.0, a high-performance drop-in replacement tool for GATK4/Picard/SAMto
... Thanks for the API documentation link! ...
written 13 months ago by Leonor Palmeira3.7k
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Comment: C: elPrep 4.0.0, a high-performance drop-in replacement tool for GATK4/Picard/SAMto
... Hi, this is a great tool! I feel you forgot to mention elPrep's modularity by design. Adding/removing filters to our elPrep call to suit our pipeline needs is done in a breeze. This allows us to use it in all sorts of NGS pipelines, and not just the GATK's Best Practices for variant calling. I also ...
written 13 months ago by Leonor Palmeira3.7k
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Job: Bioinformatician - R&D and Production Scientist (Liege, Belgium)
... **Your Profile** Master/PhD, preferably with 2 to 5 years experience as a bioinformatician in the field of genomics WES and WGS analysis. **Qualifications and experience** - You have a deep knowledge and proficiency in the development of bioinformatics tools for NGS data analysis - You have a s ...
genome ngs medicine job diagnostics written 15 months ago by Leonor Palmeira3.7k • updated 15 months ago by Devon Ryan92k
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Job: Scientist in Bioinformatics for a genomic medicine project, GIGA Research Center, University of Liege, Liege, Belgium
... The GIGA Research Center (http://www.giga.ulg.ac.be) is a multidisciplinary research group at the University of Liège aiming at developing applied genomics and proteomics research programs. The CHU Liège is a University Hospital active in all the aspects of health care, including human genetics, onc ...
bioinformatics ngs medicine job diagnostics written 20 months ago by Leonor Palmeira3.7k • updated 20 months ago by genomax74k
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Job: Post-doctoral researcher for a genomic medicine project, University of Liege, Liege, Belgium
... The GIGA (http://www.giga.ulg.ac.be) is seeking for a post-doctoral researcher for a genomic medicine project. The GIGA Research Center is a multidisciplinary research group at the University of Liège aiming at developing applied genomics and proteomics research programs. The CHU Liège ...
bioinformatics next-gen medicine job diagnostics written 23 months ago by Leonor Palmeira3.7k • updated 23 months ago by genomax74k
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Comment: C: BamUtil for Base Qual Recalibration
... This question is now 2.5 years old... With some hope : has anyone some information on performances of bamUtil compared to BQSR (not time performances but benchmarking or such) ? I would greatly appreciate any pointers! ...
written 2.5 years ago by Leonor Palmeira3.7k
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Job: Bioinformatician | NGS Diagnostic Testing @ Dept. Hum. Gen., Liege Univ. Hospital, BELGIUM
... The department of Human Genetics of the University Hospital of Liège is looking for a bioinformatician who is interested in designing, developing, and managing data analysis solutions that have direct impact on Medical management of patients. Our department develops NGS diagnostics tests in the fi ...
data science bioinformatics ngs job diagnostics written 4.4 years ago by Leonor Palmeira3.7k
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Comment: C: Retrieve Subset Positions Vcf File
... @Rm: You are right. Now that's a strange move... The latest 1.1 version I have just downloaded (tabix is now part of HTSlib) doesn't allow for the -B option although the manual (again out-of-date) still indicates it does: http://www.htslib.org/doc/tabix-1.1.html ...
written 5.0 years ago by Leonor Palmeira3.7k

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Appreciated 12 months ago, created a post with more than 5 votes. For A: Woman Sequenced With 454 Technology?
Great Question 17 months ago, created a question with more than 5,000 views. For Is there a tool to transform GenomeStudio genotype format to VCF?
Appreciated 2.5 years ago, created a post with more than 5 votes. For A: Woman Sequenced With 454 Technology?
Good Answer 2.5 years ago, created an answer that was upvoted at least 5 times. For A: Which Journals Should I Follow If I Write Software And Algorithms In Computation
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Amino Acid Change To Genomic Location: using 'backlocate'
Appreciated 2.5 years ago, created a post with more than 5 votes. For A: K-Mer Analysis
Popular Question 2.8 years ago, created a question with more than 1,000 views. For Amino Acid Change To Genomic Location: using 'backlocate'
Popular Question 4.4 years ago, created a question with more than 1,000 views. For Is there a tool to transform GenomeStudio genotype format to VCF?
Teacher 4.4 years ago, created an answer with at least 3 up-votes. For A: Find Papers That Use A Given Pdb Structure
Commentator 4.4 years ago, created a comment with at least 3 up-votes. For C: Thoughts On Galaxy For Next Generation Sequence Data Analysis
Popular Question 4.6 years ago, created a question with more than 1,000 views. For How To Force 'Bwa Samse' To Output Multiple Hits In .Sam Format?
Popular Question 4.6 years ago, created a question with more than 1,000 views. For Ngs Course Medical Genomics, Leuven, 17-20 September 2013
Teacher 4.6 years ago, created an answer with at least 3 up-votes. For A: Find Papers That Use A Given Pdb Structure
Appreciated 4.7 years ago, created a post with more than 5 votes. For A: Woman Sequenced With 454 Technology?
Teacher 5.0 years ago, created an answer with at least 3 up-votes. For A: Find Papers That Use A Given Pdb Structure
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