User: guillaume.rbt

gravatar for guillaume.rbt
guillaume.rbt530
Reputation:
530
Status:
Trusted
Location:
France
Last seen:
11 hours ago
Joined:
4 years, 4 months ago
Email:
g************@gmail.com

Posts by guillaume.rbt

<prev • 138 results • page 1 of 14 • next >
2
votes
0
answers
44
views
0
answers
RNAseq data anti-pd1 treatment
... Hi all, I'm currently gathering cancer RNAseq data, looking for public dataset of patients treated with anti-pd1 immunotherapy. I was wondering in which public database I was more likely to find this type of sequencing data. Thanks ...
immunotherapy meta-analysis rna-seq written 13 hours ago by guillaume.rbt530
0
votes
1
answer
123
views
1
answers
Comment: C: "old" microarray probes IDs correspondance with gene names
... great, thank for the tip! ...
written 5 weeks ago by guillaume.rbt530
0
votes
1
answer
123
views
1
answers
Comment: C: "old" microarray probes IDs correspondance with gene names
... thank you very much for trying, I will check other Ids to see if it could work ...
written 5 weeks ago by guillaume.rbt530
0
votes
1
answer
123
views
1
answers
Comment: C: "old" microarray probes IDs correspondance with gene names
... Thank you for your response. It's in those files that I found the IDs, the exact name of the column is "Reporter Database Entry[embl]", it's indeed not the probe name. ...
written 5 weeks ago by guillaume.rbt530
5
votes
1
answer
123
views
5 follow
1
answer
"old" microarray probes IDs correspondance with gene names
... Hi all, I'm working on a 2006 public microarray dataset ( https://www.ebi.ac.uk/arrayexpress/experiments/E-TABM-104/ ). I've reanalysed the data to get differentially expressed transcripts, and now I'm trying to test pathway enrichment for some gene sets. The problem I'm facing is that I need to ...
annotation embl microarray trancripts written 5 weeks ago by guillaume.rbt530 • updated 5 weeks ago by Pierre Lindenbaum117k
1
vote
1
answer
151
views
1
answers
Comment: C: Which is the best tutorial site to learn practical approaches on NGS?
... you're on the right place : https://www.biostarhandbook.com/ ...
written 7 weeks ago by guillaume.rbt530
0
votes
1
answer
150
views
1
answers
Comment: C: RNAseq differential expression analysis : learning design matrix
... Thank for the tip, I will look into it :) ...
written 7 weeks ago by guillaume.rbt530
0
votes
1
answer
150
views
1
answers
Comment: C: RNAseq differential expression analysis : learning design matrix
... Yes that is also what I usually do when I'm stuck, it is really helpful ! ...
written 7 weeks ago by guillaume.rbt530
10
votes
1
answer
150
views
9 follow
1
answer
RNAseq differential expression analysis : learning design matrix
... Hi all, I'm a bioinformatician and I often have to deal with RNAseq differential gene expression analysis projects. I think I understand well the whole process to get from the raw data to the the normalized read counts but, unfortunately, due to my little statistical background, I'm having trouble ...
rna-seq differential expression written 7 weeks ago by guillaume.rbt530 • updated 7 weeks ago by i.sudbery4.1k
1
vote
1
answer
119
views
1
answers
Answer: A: Best tool for Chimeric Transcript Analysis?
... There are a lot of fusion detection tools, you can find a 2016 non-exhaustive list in this paper : https://www.nature.com/articles/srep21597 In my opinion it is wise to test several tools, and to cross results from at least 3 tools to have relevant results, as it has be done here : https://www.scie ...
written 8 weeks ago by guillaume.rbt530

Latest awards to guillaume.rbt

Popular Question 6 weeks ago, created a question with more than 1,000 views. For Comparing gff files
Student 7 weeks ago, asked a question with at least 3 up-votes. For RNAseq differential expression analysis : learning design matrix
Popular Question 3 months ago, created a question with more than 1,000 views. For Comparing gff files
Popular Question 4 months ago, created a question with more than 1,000 views. For using GATK IndelRealigner
Popular Question 5 months ago, created a question with more than 1,000 views. For using GATK IndelRealigner
Popular Question 7 months ago, created a question with more than 1,000 views. For using GATK IndelRealigner
Popular Question 7 months ago, created a question with more than 1,000 views. For Comparing gff files
Popular Question 8 months ago, created a question with more than 1,000 views. For using GATK IndelRealigner
Popular Question 9 months ago, created a question with more than 1,000 views. For using GATK IndelRealigner
Popular Question 9 months ago, created a question with more than 1,000 views. For download protein sequences from NCBI
Popular Question 10 months ago, created a question with more than 1,000 views. For download protein sequences from NCBI
Appreciated 10 months ago, created a post with more than 5 votes. For A: Allele count for SNPs
Centurion 11 months ago, created 100 posts.
Popular Question 12 months ago, created a question with more than 1,000 views. For download protein sequences from NCBI
Great Question 16 months ago, created a question with more than 5,000 views. For Filter genotype in multi-sample VCF file
Popular Question 16 months ago, created a question with more than 1,000 views. For download protein sequences from NCBI
Popular Question 16 months ago, created a question with more than 1,000 views. For nb spanning reads confusion in Tophat Fusion output
Voter 18 months ago, voted more than 100 times.
Scholar 21 months ago, created an answer that has been accepted. For A: Allele count for SNPs
Scholar 23 months ago, created an answer that has been accepted. For A: Allele count for SNPs
Teacher 23 months ago, created an answer with at least 3 up-votes. For A: Allele count for SNPs
Commentator 23 months ago, created a comment with at least 3 up-votes. For C: Convert blastn to gff3
Popular Question 2.5 years ago, created a question with more than 1,000 views. For Filter genotype in multi-sample VCF file
Supporter 2.6 years ago, voted at least 25 times.
Scholar 2.6 years ago, created an answer that has been accepted. For A: Allele count for SNPs

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1173 users visited in the last hour