User: guillaume.rbt

gravatar for guillaume.rbt
guillaume.rbt220
Reputation:
220
Status:
Trusted
Location:
France
Last seen:
25 minutes ago
Joined:
2 years, 5 months ago
Email:
g************@gmail.com

Posts by guillaume.rbt

<prev • 62 results • page 1 of 7 • next >
0
votes
2
answers
124
views
2
answers
Comment: C: Print rows only if number matches
... given that you have a tabulated table "table", and your list of id on column 19 : import re with open("./table", 'r') as f1: first=True last_int=0 last_line="" for line in f1: if(last_int == int(re.findall("\d+", line.split('\t')[18])[0]) ...
written 4 days ago by guillaume.rbt220
2
votes
3
answers
139
views
3
answers
Comment: C: CNV detection techniques, algorithms, applications ...
... a useful website that references ngs tools : https://omictools.com/cnv-detection3-category ...
written 4 days ago by guillaume.rbt220
4
votes
2
answers
124
views
2
answers
Answer: A: Print rows only if number matches
... Hi, I would do it in python, with your list of id in the file "list" (beware, not carefully tested) import re with open("./list", 'r') as f1: first = True last_int = 0 last_line = "" for line in f1: if(last_int == int(re.findall("\d+", line ...
written 4 days ago by guillaume.rbt220
0
votes
0
answers
78
views
0
answers
Comment: C: tajima D, nucleotide diversity and haplotype diversity
... Unfortunately I think your sample size isn't big enough to make those analysis. One individual per population isn't enough to have meaningful information on your populations. ...
written 6 days ago by guillaume.rbt220
3
votes
0
answers
112
views
0
answers
Comment: C: Convert blastn to gff3
... maybe you can find something on this post : https://www.biostars.org/p/277/ ...
written 11 days ago by guillaume.rbt220
0
votes
1
answer
91
views
1
answers
Comment: C: convert VCF into bayescan format
... thanks, Unfortunately the VCF -> PGD step isn't working, I don't know why ...
written 11 days ago by guillaume.rbt220
1
vote
1
answer
91
views
1
answer
convert VCF into bayescan format
... Hi all, I am trying to use bayescan on a set of haploid SNPs markers I have on several samples. To do that I need to convert my multiVCF file into bayescan format. Would anyone know a way to do that? (I have tried PGDspider but it doesn't work... ) Thanks, Guillaume ...
vcf bayescan written 11 days ago by guillaume.rbt220 • updated 11 days ago by vchris_ngs2.9k
0
votes
2
answers
1.2k
views
2
answers
Answer: A: VCFTools weir-fst-pop on haploid organisms
... update : Does anyone would know a tool that computes FST on haploid populations thanks to SNPs data? Thanks ...
written 24 days ago by guillaume.rbt220
0
votes
2
answers
1.2k
views
2
answers
Comment: C: VCFTools weir-fst-pop on haploid organisms
... Hi, Have you actually found a solution? (I have the question) ...
written 24 days ago by guillaume.rbt220
1
vote
1
answer
123
views
1
answers
Answer: C: Python VCF parser
... https://pyvcf.readthedocs.io/en/latest/ ...
written 28 days ago by guillaume.rbt220

Latest awards to guillaume.rbt

Scholar 4 days ago, created an answer that has been accepted. For A: Allele count for SNPs
Teacher 4 days ago, created an answer with at least 3 up-votes. For A: Allele count for SNPs
Commentator 10 days ago, created a comment with at least 3 up-votes. For C: Convert blastn to gff3
Popular Question 7 months ago, created a question with more than 1,000 views. For Filter genotype in multi-sample VCF file
Supporter 8 months ago, voted at least 25 times.
Scholar 8 months ago, created an answer that has been accepted. For A: Allele count for SNPs
Teacher 8 months ago, created an answer with at least 3 up-votes. For A: Allele count for SNPs
Popular Question 13 months ago, created a question with more than 1,000 views. For Filter genotype in multi-sample VCF file
Popular Question 19 months ago, created a question with more than 1,000 views. For Filter genotype in multi-sample VCF file

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1797 users visited in the last hour