User: guillaume.rbt

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guillaume.rbt490
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France
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2 days, 11 hours ago
Joined:
4 years, 2 months ago
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Posts by guillaume.rbt

<prev • 129 results • page 1 of 13 • next >
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Answer: A: Best tool for Chimeric Transcript Analysis?
... There are a lot of fusion detection tools, you can find a 2016 non-exhaustive list in this paper : https://www.nature.com/articles/srep21597 In my opinion it is wise to test several tools, and to cross results from at least 3 tools to have relevant results, as it has be done here : https://www.scie ...
written 2 days ago by guillaume.rbt490
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Comment: C: read depth using samtools
... I think you want the average depth of your sequencing data, to do that you can simply take the distribution of individual bases depths and compute the mean. ...
written 13 days ago by guillaume.rbt490
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Comment: C: Mismatch analysis for 500K SNPs
... Can you be more specific of what you mean by mismatch analysis? ...
written 17 days ago by guillaume.rbt490
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Comment: C: Structure file to VCF file format
... what error message do you get when you try to do the conversion? ...
written 10 weeks ago by guillaume.rbt490
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Answer: A: Structure file to VCF file format
... Hi, You can use the software PGDspider to convert between format, I know it works from VCF to structure so it should work the other way. ...
written 10 weeks ago by guillaume.rbt490
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Comment: C: coverage of the reads over coding sequence only for one gene
... You can use bedtools coverage to compute the coverage at every base of your gene, then use R to output a graph of coverage over the length of your gene. (I don't really get the "0 to 100%" part) ...
written 6 months ago by guillaume.rbt490
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Comment: C: Fasta file display and edition
... You may find your answer on one on those previous questions : https://www.biostars.org/p/273248/ https://www.biostars.org/p/2226/ https://www.biostars.org/p/105388/ https://www.biostars.org/p/76716/ ...
written 6 months ago by guillaume.rbt490
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Comment: C: Best program for population structure analyses of whole genome SNP data of many
... You can use structure for inference of genetic clustering. And I know popgenome can compute several population genetic indices. ...
written 6 months ago by guillaume.rbt490
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Comment: C: output TMM normalized counts with edgeR
... Ok great, I did think there was something with the cpm function, but I get it know. ...
written 7 months ago by guillaume.rbt490
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Comment: C: output TMM normalized counts with edgeR
... Thank for your help. Could you explain me what the "pseudo.counts" are? ...
written 7 months ago by guillaume.rbt490

Latest awards to guillaume.rbt

Popular Question 7 weeks ago, created a question with more than 1,000 views. For Comparing gff files
Popular Question 9 weeks ago, created a question with more than 1,000 views. For using GATK IndelRealigner
Popular Question 3 months ago, created a question with more than 1,000 views. For using GATK IndelRealigner
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Popular Question 5 months ago, created a question with more than 1,000 views. For Comparing gff files
Popular Question 6 months ago, created a question with more than 1,000 views. For using GATK IndelRealigner
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Popular Question 7 months ago, created a question with more than 1,000 views. For download protein sequences from NCBI
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Appreciated 8 months ago, created a post with more than 5 votes. For A: Allele count for SNPs
Centurion 9 months ago, created 100 posts.
Popular Question 10 months ago, created a question with more than 1,000 views. For download protein sequences from NCBI
Great Question 14 months ago, created a question with more than 5,000 views. For Filter genotype in multi-sample VCF file
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Popular Question 14 months ago, created a question with more than 1,000 views. For nb spanning reads confusion in Tophat Fusion output
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Commentator 21 months ago, created a comment with at least 3 up-votes. For C: Convert blastn to gff3
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Filter genotype in multi-sample VCF file
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Scholar 2.5 years ago, created an answer that has been accepted. For A: Allele count for SNPs
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Popular Question 2.9 years ago, created a question with more than 1,000 views. For Filter genotype in multi-sample VCF file

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