User: bpz

gravatar for bpz
bpz60
Reputation:
60
Status:
New User
Location:
Mexico
Last seen:
11 months, 2 weeks ago
Joined:
3 years, 5 months ago
Email:
b**@ciencias.unam.mx

Posts by bpz

<prev • 33 results • page 1 of 4 • next >
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Proteome-genome cross reference
... Hello there I wonder if anyone can help me. I need to check the gene sequence of all proteins from a bacteria's proteome,I need to compare the first few codons. Are there any tools out there that can help me with this? Thanks in advance. ...
genome proteome written 11 months ago by bpz60
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Comment: C: Logos building from pwm (help)
... Hi Yes, that is exactly what I want. I will check seqlogo. Can you recommend a tutorial for it? ...
written 16 months ago by bpz60
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Comment: C: Logos building from pwm (help)
... I have 48 motifs to prepare. I think I can convert them by hand. ...
written 16 months ago by bpz60
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Comment: A: Logos building from pwm (help)
... Mmm, I only have the pwm as I showed it. Does anyone knows how can I convert it into transfac format? or how can I get a logos from the data I have? Thanks in advance. ...
written 16 months ago by bpz60
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Comment: A: Logos building from pwm (help)
... Does anyone knows how the transfac format looks like? Thanks ...
written 16 months ago by bpz60
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Logos building from pwm (help)
... Hello everyone Maybe this is very simple, but I can't find a way to do it. I need to build a logos from a position weight matrix (pwm), I am trying to use WEBLOGO, the manual says it accepts MSAs and PWMs, but I can only find the way to upload alignments. I just have a pwm: Frequencies: A, C, G, T ...
pwm logos dna written 16 months ago by bpz60
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Comment: C: Tree rooting method
... That is why I need to find a method to get a root with evolutionary significance. (the midpoint root method probably won't work, for the reason you stated). I don't know if only the outgroup method provides a significant root. ...
written 19 months ago by bpz60
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Comment: C: Tree rooting method
... A root gives a tree "polarity", it is indispensable if you need to calculate a molecular clock. ...
written 19 months ago by bpz60
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Answer: A: Tree rooting method
... Anyone?, Is there an alternative method? ...
written 19 months ago by bpz60
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Tree rooting method
... Hello I have a phylogenetic tree composed of +1000 protein sequences, and I need to assign a root. Finding an outgroup is extremely difficult. I was wondering if anyone knows a way to assign a root without an outgroup (besides the midpoint rooting method). Thanks for the help, cheers. ...
phylogeny outgroup rooting written 19 months ago by bpz60

Latest awards to bpz

Popular Question 16 months ago, created a question with more than 1,000 views. For Contig alignment software
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Sequence extraction from a fastq file

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