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Showing :
answers
0
votes
1
reply
6.6k
views
Answer:
A: Extracting residue name and residue ID from PDB.
7.2 years ago by
Petr Ponomarenko
★ 2.8k
1
vote
0
replies
921
views
Answer:
A: associate a variant with a mutation in hg19
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
0
replies
3.0k
views
Answer:
A: Calculating the number of synonymous and non-synonymous sites for genes
7.2 years ago by
Petr Ponomarenko
★ 2.8k
1
vote
1
reply
2.6k
views
Answer:
A: Bed to BAM information transfer
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
0
replies
1.4k
views
Answer:
A: Sampling from the protein data bank.
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
0
replies
2.9k
views
Answer:
A: Confusion regarding generating phylogenetic tree from snp data
7.2 years ago by
Petr Ponomarenko
★ 2.8k
1
vote
1
reply
5.6k
views
Answer:
A: Is log-transformation needed to calculate Euclidean distance metric from FPKM/TP
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
0
replies
2.5k
views
Answer:
A: Order of Allel 1 and 2 in .bim-File
7.2 years ago by
Petr Ponomarenko
★ 2.8k
4
votes
2
replies
2.2k
views
Answer:
A: Confusion : Why and how does a nucleotide in Reference Genome is differenet from
7.2 years ago by
Petr Ponomarenko
★ 2.8k
2
votes
1
reply
4.2k
views
Answer:
A: NCBI TaxIds from Diamond Blast output
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
1
reply
3.3k
views
Answer:
A: pdb to dssp
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
0
replies
2.6k
views
Answer:
A: Convert amino acid and nucleotide coding changes between notation formats
7.2 years ago by
Petr Ponomarenko
★ 2.8k
1
vote
1
reply
2.8k
views
Answer:
A: Troubles comparing SNP called on Illumina reference human genome
7.2 years ago by
Petr Ponomarenko
★ 2.8k
2
votes
1
reply
1.2k
views
Answer:
A: resno fields within a pdb file
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
0
replies
2.1k
views
Answer:
A: In GATK, SNPs and INDELs are called separately or together?
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
3
replies
3.0k
views
Answer:
A: Can I merge fastq files of a same sample from two sequencers for gene expression
7.2 years ago by
Petr Ponomarenko
★ 2.8k
2
votes
1
reply
3.3k
views
Answer:
A: What is the fastest way to add 'Ns' to variable length sequences in a .fasta suc
7.2 years ago by
Petr Ponomarenko
★ 2.8k
1
vote
2
replies
7.5k
views
Answer:
A: BWA mem output inconsistent on same but re-ordered FASTQ input
7.2 years ago by
Petr Ponomarenko
★ 2.8k
3
votes
1
reply
1.8k
views
Answer:
A: Amino Acid Substitution Loop Generates Incorrect Output: No Mutations in the Out
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
1
reply
2.1k
views
Answer:
A: Samtools variant caller for each individual sample
7.2 years ago by
Petr Ponomarenko
★ 2.8k
11
votes
0
replies
7.1k
views
Answer:
A: How to sort VCF "chr1, chr2..."
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
0
replies
2.1k
views
Answer:
A: merged paried end RNASeq
7.2 years ago by
Petr Ponomarenko
★ 2.8k
3
votes
0
replies
2.1k
views
Answer:
A: merged paried end RNASeq
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
0
replies
2.1k
views
Answer:
A: merged paried end RNASeq
7.2 years ago by
Petr Ponomarenko
★ 2.8k
1
vote
1
reply
1.5k
views
Answer:
A: how to categorize genes by their expression levels in RNA-seq?
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
2
replies
10k
views
Answer:
A: mol2 to pdb conversion for docking
7.2 years ago by
Petr Ponomarenko
★ 2.8k
3
votes
1
reply
2.6k
views
Answer:
A: isoforms and the definition of a protein
7.2 years ago by
Petr Ponomarenko
★ 2.8k
1
vote
1
reply
6.1k
views
Answer:
A: Match, count and extract the positions of exact strings of nucleotides from mult
7.2 years ago by
Petr Ponomarenko
★ 2.8k
1
vote
1
reply
1.8k
views
Answer:
A: Amino Acid Substitution Loop Generates Incorrect Output: No Mutations in the Out
7.2 years ago by
Petr Ponomarenko
★ 2.8k
2
votes
1
reply
2.2k
views
Answer:
A: Which SNPs fall within genes and what's their description?
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
2
replies
1.7k
views
Answer:
A: Invariant base quality calls
7.2 years ago by
Petr Ponomarenko
★ 2.8k
3
votes
2
replies
2.6k
views
Answer:
A: Free Genetic Genealogy Software
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
1
reply
1.1k
views
Answer:
A: Do I need to only keep exon in gene GTF when I run Cuffdiff?
7.2 years ago by
Petr Ponomarenko
★ 2.8k
1
vote
1
reply
2.1k
views
Answer:
A: Retrieve all distinct domains from PDB (or lots of them)?
7.2 years ago by
Petr Ponomarenko
★ 2.8k
1
vote
1
reply
11k
views
Answer:
A: Extract all bacteria sequences from the nr database
7.2 years ago by
Petr Ponomarenko
★ 2.8k
2
votes
0
replies
2.2k
views
Answer:
A: difference in genotypes in a multisample vcf file
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
1
reply
2.3k
views
Answer:
A: SNP array data storage and management with RDBMS (postgres)
7.2 years ago by
Petr Ponomarenko
★ 2.8k
2
votes
2
replies
3.0k
views
Answer:
A: trim special lenght from special tile in a fastq file
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
0
replies
2.2k
views
Answer:
A: Converting .sam to .bam with samtools and I get a new error with every repeated
7.2 years ago by
Petr Ponomarenko
★ 2.8k
3
votes
0
replies
2.6k
views
Answer:
A: How do you spend your time (productively) when your script is running?
7.2 years ago by
Petr Ponomarenko
★ 2.8k
2
votes
1
reply
6.0k
views
Answer:
A: how to extract coordinates from Two PDB files and how to calculate all atom t
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
1
reply
1.5k
views
Answer:
A: Build a promoter finding/prediction tool for Microbacterium (Specifically for MT
7.2 years ago by
Petr Ponomarenko
★ 2.8k
2
votes
0
replies
2.8k
views
Answer:
A: Get part of a sequence from a .bam file, considering the reference genome positi
7.2 years ago by
Petr Ponomarenko
★ 2.8k
3
votes
1
reply
2.0k
views
Answer:
A: find matching gene symbol
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
0
replies
1.5k
views
Answer:
A: modeling of large proteins
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
0
replies
3.1k
views
Answer:
A: Aligning de-novo assembly to reference strain genome
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
0
replies
2.4k
views
Answer:
A: Research advice needed
7.2 years ago by
Petr Ponomarenko
★ 2.8k
0
votes
1
reply
1.8k
views
Answer:
A: Very large FPKM from cuffdiff that doesn't match read counts
7.2 years ago by
Petr Ponomarenko
★ 2.8k
2
votes
0
replies
2.1k
views
Answer:
A: Hand-waving Multidisciplinary Aspects of Research Projects (Discussion)
7.2 years ago by
Petr Ponomarenko
★ 2.8k
1
vote
1
reply
2.3k
views
Answer:
A: Prediction of peptide function, How to do?
7.2 years ago by
Petr Ponomarenko
★ 2.8k
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