User: thackl

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thackl2.5k
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Posts by thackl

<prev • 223 results • page 1 of 23 • next >
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Comment: C: Merging all sequences with identical ID's
... Ha, just realized, I recommended your tool :) ...
written 10 days ago by thackl2.5k
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Answer: A: Merging all sequences with identical ID's
... `seqkit concat` might do what you want: "concatenate sequences with same ID from multiple files" https://github.com/shenwei356/seqkit ...
written 10 days ago by thackl2.5k
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Comment: C: error for barplot in enrichGO(clusterProfiler)
... Made it bold, an put it in front of the instructions ;) ...
written 10 weeks ago by thackl2.5k
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Answer: A: error for barplot in enrichGO(clusterProfiler)
... I had the same problem. It is a general problem with the R graphics device. R's default backend for drawing graphics on X11 windows is "Xlib", and that uses the x11-font that doesn't work. From what I understand those x11 fonts are discouraged on current linux distros (not sure about other OS's). ...
written 10 weeks ago by thackl2.5k
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Comment: C: How to run velvet multithreaded?
... No, sorry I don't. But I think that it is not unlikely. ...
written 11 months ago by thackl2.5k
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Answer: A: Bimodal GC content
... I don't think that you can necessarily extend the observations made above to directly to RNASeq experiments. Also, I don't really know if a bimodal GC distribution is something to be concerned about in the first place when looking at RNAseq. You might need to talk to people more involved with RNASeq ...
written 13 months ago by thackl2.5k
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Comment: C: Dowload all complete genomes grom GenBank .gbk full format
... To elaborate a bot on 5heikki's suggestion: The following commands for example should download all complete genome assemblies for E.coli (taxid: 562) wget ftp://ftp.ncbi.nlm.nih.gov/genomes/refseq/bacteria/assembly_summary.txt awk -v taxid=562 -v status="Complete Genome" -F $'\t' '$7==taxid ...
written 24 months ago by thackl2.5k
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Comment: C: ALLPATHS-LG slow ... multi threads possible ?
... What was your solution?? Up to 5TB for 3Gbp plant genome. ...
written 2.1 years ago by thackl2.5k
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Comment: C: Is there a term for a genome assembly that is not closed?
... And technically, even a draft assembly can be closed :) ...
written 2.1 years ago by thackl2.5k
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Answer: A: Is there a term for a genome assembly that is not closed?
... What [5heikki][1] said: draft genome assembly [1]: https://www.biostars.org/u/9490/ ...
written 2.1 years ago by thackl2.5k

Latest awards to thackl

Good Answer 6 weeks ago, created an answer that was upvoted at least 5 times. For A: PacBio coverage question for a plant genome
Appreciated 9 months ago, created a post with more than 5 votes. For A: PacBio coverage question for a plant genome
Teacher 11 months ago, created an answer with at least 3 up-votes. For A: paired end sequencing, sequence distance
Appreciated 14 months ago, created a post with more than 5 votes. For A: PacBio coverage question for a plant genome
Popular Question 17 months ago, created a question with more than 1,000 views. For minia assembler - finished with log assembly: 70%
Popular Question 22 months ago, created a question with more than 1,000 views. For minia assembler - counting kmers 'gatb::core::system::Exception'
Commentator 2.2 years ago, created a comment with at least 3 up-votes. For C: bwa mem runs slowly the first time
Good Answer 2.4 years ago, created an answer that was upvoted at least 5 times. For A: PacBio coverage question for a plant genome
Appreciated 2.5 years ago, created a post with more than 5 votes. For A: PacBio coverage question for a plant genome
Teacher 2.5 years ago, created an answer with at least 3 up-votes. For A: paired end sequencing, sequence distance
Scholar 2.7 years ago, created an answer that has been accepted. For A: paired end sequencing, sequence distance
Teacher 2.7 years ago, created an answer with at least 3 up-votes. For A: paired end sequencing, sequence distance
Scholar 2.9 years ago, created an answer that has been accepted. For A: paired end sequencing, sequence distance
Appreciated 3.0 years ago, created a post with more than 5 votes. For A: PacBio coverage question for a plant genome
Teacher 3.0 years ago, created an answer with at least 3 up-votes. For A: paired end sequencing, sequence distance
Teacher 3.0 years ago, created an answer with at least 3 up-votes. For A: paired end sequencing, sequence distance
Commentator 3.0 years ago, created a comment with at least 3 up-votes. For C: bwa mem runs slowly the first time
Teacher 3.1 years ago, created an answer with at least 3 up-votes. For A: paired end sequencing, sequence distance
Teacher 3.1 years ago, created an answer with at least 3 up-votes. For A: paired end sequencing, sequence distance
Scholar 3.1 years ago, created an answer that has been accepted. For A: paired end sequencing, sequence distance
Good Answer 3.1 years ago, created an answer that was upvoted at least 5 times. For A: PacBio coverage question for a plant genome
Scholar 3.1 years ago, created an answer that has been accepted. For A: paired end sequencing, sequence distance
Teacher 3.1 years ago, created an answer with at least 3 up-votes. For A: paired end sequencing, sequence distance
Appreciated 3.1 years ago, created a post with more than 5 votes. For A: PacBio coverage question for a plant genome
Scholar 3.1 years ago, created an answer that has been accepted. For A: paired end sequencing, sequence distance

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