User: Bahrani

gravatar for Bahrani
Bahrani30
Reputation:
30
Status:
New User
Location:
United States
Last seen:
1 year, 8 months ago
Joined:
4 years, 12 months ago
Email:
m**********@unomaha.edu

Posts by Bahrani

<prev • 7 results • page 1 of 1 • next >
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Do the BLAST scores have any relation between them?
... Is there any relation among the BLAST scores (E-value, similarity, identity, gap, bit score)?  Is the e-value score for an alignment proportional to other scores, such as similarity score (i.e. the lower the e-value, the higher the similarity)? Thank you! ...
score sequence e-value blast alignment written 3.9 years ago by Bahrani30 • updated 3.9 years ago by karl.stamm3.5k
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How to Determine the Most Conserved Sequence from BLAST Result?
... I used BLAST to find the best aligned DNA sequence to my query sequence. The BLAST result shows a number of sequences that it calculated to be the best aligned sequences to the query sequence that I give. Each of those aligned sequences have an e-value score representing the best hit by chance. My ...
sequence-alignment alignment blast bioinformatics written 4.0 years ago by Bahrani30 • updated 4.0 years ago by Michael Dondrup46k
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What is an Example of Protein that has Bissulfosuccinimidyl suberate Cross-linker?
... Hello Scientists! I want to know what are the known proteins that have Bissulfosuccinimidyl suberate cross-linker (BS3) in their structures?  Is there any way to make such query in the protein structure databases such as PDB?  I have tried doing the search in PDB using the "Text Search" option in t ...
pdb atom protein structure query written 4.1 years ago by Bahrani30
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Gene Ontology Tools
... What are gene ontology websites or tools that I can use other than http://geneontology.org/?  I used to have one in favor but I have totally forgotten its name.  I remember it used to have a logo like a tea cup. Any idea is appreciated!    ...
gene website gene ontology tool written 4.1 years ago by Bahrani30 • updated 4.1 years ago by Jean-Karim Heriche21k
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Comment: C: Filter Biological Process Related to Mitochondria for a List of Genes
... Thank you a lot ... Your comment is so valuable!  ...
written 5.0 years ago by Bahrani30
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Comment: C: Filter Biological Process Related to Mitochondria for a List of Genes
... This must be helpful!  Since my goal is to annotate about ~1000 genes, do you think it would be possible to query more than one Uniprot ID to find the corresponding annotation?  Or this should performed programmatically?  ...
written 5.0 years ago by Bahrani30
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Filter Biological Process Related to Mitochondria for a List of Genes
... I have a list of Uniprot gene IDs associated with Gene Ontology (biological processes), which I have obtained from Uniprot.org.  I am showing only one gene ID with associated the biological processes -- because the other genes have a lengthy biological process.  O95831    activation of cysteine-typ ...
biological_process gene mining text ontology written 5.0 years ago by Bahrani30 • updated 5.0 years ago by Siva1.7k

Latest awards to Bahrani

Popular Question 3.2 years ago, created a question with more than 1,000 views. For How to Determine the Most Conserved Sequence from BLAST Result?
Popular Question 3.2 years ago, created a question with more than 1,000 views. For Filter Biological Process Related to Mitochondria for a List of Genes
Student 5.0 years ago, asked a question with at least 3 up-votes. For Filter Biological Process Related to Mitochondria for a List of Genes

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