User: Sudhir Jadhao

gravatar for Sudhir Jadhao
Reputation:
60
Status:
Trusted
Location:
India
Last seen:
5 days, 15 hours ago
Joined:
4 years, 11 months ago
Email:
s***************@gmail.com

Posts by Sudhir Jadhao

<prev • 62 results • page 1 of 7 • next >
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Answer: A: Bow: Bioinformatics On Windows: Bwa And Samtools
... Not able to find samtools exe file? ...
written 21 days ago by Sudhir Jadhao60
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Comment: C: Plink: Fisher's Exact test ERROR: FEXACT error 3
... Thank Fabio!! Will try to use new version ...
written 5 weeks ago by Sudhir Jadhao60
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Plink: Fisher's Exact test ERROR: FEXACT error 3
... Hello Everyone, While running plink, I got below error: FEXACT error 3 plink-1.07-x86_64/plink --noweb --file inputplinefile --pheno input.phe --fisher Does anybody have any idea of it? ...
association study plink written 5 weeks ago by Sudhir Jadhao60 • updated 5 weeks ago by ATpoint24k
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Comment: C: SNP calling in Identical exons of two different genes
... Yes, but how does it handle the identical exon SNP calling? ...
written 5 months ago by Sudhir Jadhao60
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Bam file @RG read group information LB (The library from which the read has been sequenced)
... Hello everyone, I have 120 bam files. I want to run Breakdancer-max. Bam file currently have below read group information @RG ID:sample105_sg1_humansingle1_l1 SM:sample105_sg1_humansingle1 PL:ILLUMINA To run Breakdancer LB (library) information is needed? I don't have much idea about the se ...
alignment sequencing written 6 months ago by Sudhir Jadhao60
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SNP calling in Identical exons of two different genes
... Hello Everyone, I am calling germline mutation using BWA and GATK pipeline. RHD and RHCE gene share 97% homology. The exon2 and exon8 of these genes are identical. So there is a high chance that the reads from these regions may map to each other and call false negative SNPs How can I differentia ...
genome homolog alignment snp identical exon written 8 months ago by Sudhir Jadhao60
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Comment: C: How to calculate Minor Allele Frequency (MAF) for your own population data
... Thank you, Kevin, this answers my main question.!! ...
written 13 months ago by Sudhir Jadhao60
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Comment: C: How to calculate Minor Allele Frequency (MAF) for your own population data
... The calculation you explained is with respect to all samples? Means the "If (AF < 0.5) then MAF = AF" 0.5 MAF of that particular allele is with respect to all sample present in VCF? ...
written 13 months ago by Sudhir Jadhao60
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Comment: C: How to calculate Minor Allele Frequency (MAF) for your own population data
... Can you explain it in little details with respect to MAF? ...
written 13 months ago by Sudhir Jadhao60
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Comment: C: How to calculate Minor Allele Frequency (MAF) for your own population data
... Thank again Kevin, What is the source of your VCF? => The file created using below command( merging of multiple vcf): java -jar ~/Tools/GenomeAnalysisTK-3.8-1-0-gf15c1c3ef/GenomeAnalysisTK.jar -T CombineVariants -R ~/Database2/HG19_UCSC/hg19/Sequence/Chromosomes/GATK_UCSC_HG19.fasta --varia ...
written 13 months ago by Sudhir Jadhao60 • updated 13 months ago by Kevin Blighe50k

Latest awards to Sudhir Jadhao

Popular Question 4 months ago, created a question with more than 1,000 views. For Chipseq data with Mock, Input And IP
Popular Question 4 months ago, created a question with more than 1,000 views. For HTSeq TSS plot Error
Popular Question 4 months ago, created a question with more than 1,000 views. For Plasmid Genome Assembly
Popular Question 5 months ago, created a question with more than 1,000 views. For Chipseq data with Mock, Input And IP
Popular Question 12 months ago, created a question with more than 1,000 views. For Chipseq data with Mock, Input And IP
Popular Question 17 months ago, created a question with more than 1,000 views. For Chipseq data with Mock, Input And IP
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Plasmid Genome Assembly
Popular Question 2.1 years ago, created a question with more than 1,000 views. For Chipseq data with Mock, Input And IP
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Plasmid Genome Assembly
Popular Question 2.9 years ago, created a question with more than 1,000 views. For Plasmid Genome Assembly
Popular Question 2.9 years ago, created a question with more than 1,000 views. For Plasmid Genome Assembly
Popular Question 3.0 years ago, created a question with more than 1,000 views. For Metaseq: Average ChIP-seq signal over promoters error
Popular Question 3.0 years ago, created a question with more than 1,000 views. For Metaseq: Average ChIP-seq signal over promoters error

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