User: Tom K

gravatar for Tom K
Tom K20
Reputation:
20
Status:
New User
Location:
Japan/Yokohama/RIKEN IMS
Website:
https://github.com/Tom...
Twitter:
@tomkxy
Last seen:
1 week, 5 days ago
Joined:
4 years, 9 months ago
Email:
t***************@gmail.com

Posts by Tom K

<prev • 3 results • page 1 of 1 • next >
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Answer: A: Putting R codes on MS word document
... R has a history() command that will return the commands you’ve run to the console or a text file. I recommend working in RStudio where you can write a “script” and run lines from it so what you did is saved as you go. It’s your thesis or paper so up to you but I’d consider digital supplementary dat ...
written 12 days ago by Tom K20
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Comment: C: what's special about smartpca vs regular pca
... I think smartpca is just meant to be faster than prcomp. There are many implementations of PCA and some are needed to run larger matrices that require too much compute-time or memory to run with regular approaches. They may give slightly different results due to approximations (which are usually acc ...
written 9 weeks ago by Tom K20
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Answer: A: Using rna-seq, why map reads to the genome but calculate gene expression by alig
... Would you expect all reads to map to the "transcriptome"? The reference and annotation could always be missing some genes. It is also possible that the reads includes some non-coding RNAs depending on the sequencing technology. Another possibility is that the reads do arise from a transcript but wer ...
written 14 months ago by Tom K20

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