User: beanavarro85

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Posts by beanavarro85

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Comment: C: LD-decay in a r2 vs distance(cm) plot
... This post is great! I am getting into the same issue, did you find a solution? Would you mind to share? Thanks, Beatriz ...
written 4 months ago by beanavarro850
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Comment: C: Stats on the overlapping length within two bed files
... I was sure there was a way to do it in one line, but didn't know how! ...
written 16 months ago by beanavarro850
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Comment: C: Stats on the overlapping length within two bed files
... Awesome! Thanks, it worked perfectly. Since the order won't change, I have pasted this two columns to my reference.bed file like this: $ bedmap --echo-overlap-size reference.bed map.bed | awk '{ s=0; t=0; n=split($0, a, ";"); for(i = 1; i <= n; i++) { if(a[i] > 100) { s += a[i]; t++; } ...
written 16 months ago by beanavarro850
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Comment: C: Stats on the overlapping length within two bed files
... Thanks! I will next time, sorry about that. ...
written 16 months ago by beanavarro850
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Stats on the overlapping length within two bed files
... Hi all, I have two bed files, and I have run bedtools intersect to calculate the overlapping regions. bedtools intersect -a fileA.bed -b fileB.bed -wao > overlaps.bed I need to calculate the number of overlaps that are longer than 100 bp (i.e. value higher than 100 in the 8th column of ...
bedtools genome bedops written 16 months ago by beanavarro850 • updated 16 months ago by Alex Reynolds28k
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Answer: A: How to do goseq with user created "lenghtData" and category mapping objects?
... Hi! I have the same problem here, did you get any answers or find a solution? Thanks! ...
written 4.6 years ago by beanavarro850

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