User: Fedor Gusev

gravatar for Fedor Gusev
Fedor Gusev210
Reputation:
210
Status:
Trusted
Location:
Russian Federation
Website:
http://single-stranded...
Last seen:
2 years, 11 months ago
Joined:
9 years, 3 months ago
Email:
g******@gmail.com

Posts by Fedor Gusev

<prev • 20 results • page 1 of 2 • next >
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Answer: A: Extract V3-V4 region for 16S
... See this blog post and the last comment on that page: [http://blog.mothur.org/2016/07/07/Customization-for-your-region/][1] [1]: http://blog.mothur.org/2016/07/07/Customization-for-your-region/ ...
written 3.0 years ago by Fedor Gusev210
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Comment: C: Freebayes and snpeff give different number of SNPs
... SnpEff is a tool to annotate an existing VCF file, not a different variant caller. ...
written 5.6 years ago by Fedor Gusev210
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Comment: C: BigWig library for Java
... Can you suggest any replacements for wig and bed? ...
written 5.6 years ago by Fedor Gusev210
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Answer: A: NGS CNVtools with no controls
... FREEC can do that. http://bioinfo-out.curie.fr/projects/freec/ ...
written 5.7 years ago by Fedor Gusev210
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Answer: A: Pindel: RPL structural variation type
... Replacement. See this post on seqanswers. ...
written 5.8 years ago by Fedor Gusev210
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Comment: C: Merge user profiles? (Answered question using wrong account)
... What would you need a secondary account for? ...
written 6.0 years ago by Fedor Gusev210
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Answer: A: Reference transcriptome ?
... You can download FASTA files from Ensembl: ftp://ftp.ensembl.org/pub/release-75/fasta/homo_sapiens/cdna/ and ftp://ftp.ensembl.org/pub/release-75/fasta/homo_sapiens/ncrna/. But be sure to check if ncRNA set is included into cDNA set -- I am not sure about it.  ...
written 6.1 years ago by Fedor Gusev210
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Answer: A: Error while performing MACS program
... BWA does not support colorspace reads since version 0.6.1. I assume you input file is incorrect; you have to use another aligner. I suspect that you provided -c option for MACS instead of -t. ChIP-seq experiments usually (but no necessary) have two experiments: treatment and control. If you don't h ...
written 6.1 years ago by Fedor Gusev210
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Phylop Results Interpretation
... I've downloaded a multiple sequence alignment of 100 species for a fragment of human ACTB gene (specifically for one of it's exons; coordinates are chr7:5567961-5568345) from UCSC table browser. The file itself is available at https://www.dropbox.com/s/tvm35yydtjn7jvx/ACTB.some_exon.maf. When lookin ...
written 6.4 years ago by Fedor Gusev210 • updated 6.2 years ago by Biostar ♦♦ 20
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Comment: C: Tophat2 Mapping Qualities
... Is this documented anywhere? ...
written 6.4 years ago by Fedor Gusev210

Latest awards to Fedor Gusev

Popular Question 4.3 years ago, created a question with more than 1,000 views. For How To Get All Runs For A Sample In Sra?
Popular Question 4.3 years ago, created a question with more than 1,000 views. For Downloading Alternative Human Assemblies
Scholar 4.3 years ago, created an answer that has been accepted. For A: Bacterial Genomes To Download
Popular Question 5.4 years ago, created a question with more than 1,000 views. For How To Get All Runs For A Sample In Sra?
Scholar 5.4 years ago, created an answer that has been accepted. For A: Is There A Tool (Samtools, Picard ..) To Filter Certain Flags In Bam File ?
Good Answer 6.0 years ago, created an answer that was upvoted at least 5 times. For A: Is There A Tool (Samtools, Picard ..) To Filter Certain Flags In Bam File ?
Appreciated 6.3 years ago, created a post with more than 5 votes. For A: Is There A Tool (Samtools, Picard ..) To Filter Certain Flags In Bam File ?
Teacher 6.3 years ago, created an answer with at least 3 up-votes. For A: Is There A Tool (Samtools, Picard ..) To Filter Certain Flags In Bam File ?

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