User: Mo
Mo • 920
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Posts by Mo
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... It is one of the best databases for pathway discovery. However, you should never trust it fully. As far as I know, IPA is very trustable (but very expensive) because of the fact that they curate data manually. Most of the databases are based on text mining and ofcourse the FDR is rather high. All sa ...
written 2.1 years ago by
Mo • 920
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... @genomax what is wrong with using htseq-count ? do you think it will not be a good idea to use that ? I personally think one can simply use that instead re-analysing the whole raw files (because you dont need to go trough splicing, alignment etc etc. ...
written 2.1 years ago by
Mo • 920
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... @Devon Ryan I think DESeq2 is more suitable than other packages because the data is count and DESeq2 is built for such type of data ...
written 3.5 years ago by
Mo • 920
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... @acorella Can you define the z-socre? is it the z-score normalisation that for each element of a given data as such that e.g. a vector of expression is centered to have mean 0 and scaled to have standard deviation 1? After checking , I came across this post. I believe this is your answer https://ww ...
written 3.5 years ago by
Mo • 920
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... @Govi988 As i said, this was my experience ! however, i just wanted to show you the dark side of science too. I have done many of these steps. I cannot return to this post again, so if i don't answer anything, I apologise already. I hope my highlights give you some point that you select the best pat ...
written 3.5 years ago by
Mo • 920
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... @venu Not not true! I know personally people with 40-50 years doing PhDs . everything is possible venu ...
written 3.5 years ago by
Mo • 920
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... @Carlo Yague This is obligation for all PhD students in different universities. You are student , now it is soon for you to get my point ! once you finish , you understand ! Oh by the way I see you are in belgium means the best university should be Leuven (as far as I know, I did not see rocket scie ...
written 3.5 years ago by
Mo • 920
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... @Govi988 basically industry do not care about publication. They care about what you do for them. money money talking. academy do not train you for that especially these days that the lead of a group is searching for money to keep you as a post doc and has very little time to even talk about a projec ...
written 3.5 years ago by
Mo • 920
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... This is my personal experience. BE very careful if you continue with PhD. No matter what you have done in academy , if you don't have connection you are most likely going to search a lot to find a job. These days people are very much into connections (like it or not) because the money in EU is down, ...
written 3.5 years ago by
Mo • 920
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Answer:
A: Active site Prediction
... Sometime you don't need to ask question but use google. for example this website http://www.scfbio-iitd.res.in/dock/ActiveSite.jsp . COFACTOR will take the predicted pdb as input and has been ranked as the best server for function prediction in CASP9
http://zhanglab.ccmb.med.umich.edu/COFACTOR/
s ...
written 3.6 years ago by
Mo • 920
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