User: Ana Rodrigues Grant

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30
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New User
Location:
San Diego, CA
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1 month, 3 weeks ago
Joined:
6 years, 8 months ago
Email:
a*******@gmail.com

Posts by Ana Rodrigues Grant

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Comment: C: List Of Dbsnp Variants Where Reference Genome Has Minor Allele
... Interesting paper Daniel - thanks! I don't have population information for the current datasets... for now, I am planning to tag these particular alleles and use that in combination with the G5A annotation to de-prioritize these variants (i.e. reference genome is minor allele, and minor allele is & ...
written 6.0 years ago by Ana Rodrigues Grant30
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Comment: C: List Of Dbsnp Variants Where Reference Genome Has Minor Allele
... Interesting paper Daniel - thanks! I don't have population information for the current datasets... for now, I am planning to filter these particular alleles only when they are also annotated as G5A (i.e. reference genome is minor allele, and minor allele is <5% in all populations). ...
written 6.0 years ago by Ana Rodrigues Grant30
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Comment: C: List Of Dbsnp Variants Where Reference Genome Has Minor Allele
... Thank you so much Pierre. This is exactly what I need. ...
written 6.0 years ago by Ana Rodrigues Grant30
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List Of Dbsnp Variants Where Reference Genome Has Minor Allele
... While working on a couple of exome projects, I've ran into situations where for some of the variants we are calling, the reference genome allele is annotated in dbSNP as the minor allele (MAF<5%), and as such the variants are not so interesting to us. Here is an example:rs7185 < http://www.nc ...
exome reference dbsnp variant written 6.0 years ago by Ana Rodrigues Grant30 • updated 21 months ago by Biostar ♦♦ 20
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Answer: A: How To Read A Fasta File With The Bio3D Package
... The R system.file() command is the problem here. That is used in the bio3d documentation to indicate that the file ("examples/hivp_xray.fa") is somewhere in the bio3d package directory, wherever that may be in your system. When reading your own files, all you need is the actual path: foo <-"~/H ...
written 6.7 years ago by Ana Rodrigues Grant30
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Answer: A: How To Get Related Kinase Family Members, Given A Kinase?
... www.kinase.com is your best bet. All the supplementary material for the Manning paper is still available there, as are updated kinase sequence files (domain and full length) for several organisms. ...
written 6.7 years ago by Ana Rodrigues Grant30

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Popular Question 3.3 years ago, created a question with more than 1,000 views. For List Of Dbsnp Variants Where Reference Genome Has Minor Allele
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