User: Xtof
Xtof • 170
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Posts by Xtof
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... PERMANENT ENGINEER POSITION
JOB DESCRIPTION
Applications are invited for a permanent engineer position at the Institut Pasteur of Paris (France) in the Statistical Genetics group. The engineer will work closely with researchers from the group and with collaborators from the Center of Bioinformati ...
written 3.2 years ago by
Xtof • 170
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... Ten permanent positions in Bioinformatics and Biostatistics
Bioinformatics, biostatistics and integrative biology have emerged as strategic priorities for the Institut Pasteur. A new “Center for Bioinformatics, Biostatistics and Integrative Biology” (C3BI – https://c3bi.pasteur.fr) has been create ...
written 4.6 years ago by
Xtof • 170
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... The new direction of Institut Pasteur has defined bioinformatics and systems biology as strategic priorities. A « Center for Bioinformatics, Biostatistics and Integrative Biology » has been recently created on the Parisian Campus. The objective of this center is to federate and strengthen capacities ...
written 5.5 years ago by
Xtof • 170
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... Hi
You can try using the software CRAC (http://crac.gforge.inria.fr/). It is a mapping software specially designed for finding fusion.
I saw it in a meeting last week and it seemed quite performant.
...
written 7.0 years ago by
Xtof • 170
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... If the reads are on the reverse strand you won't have the 5' end but the 3' end. In that case you'll have to add the read length to the 3' end position to get the 5'end position
...
written 7.1 years ago by
Xtof • 170
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... Hi Arron
I don't use Biopython but I think that for the first sequence of your fasta file for example r.id gives you "gnl|TC-DB|P0A334".
But into the id file only the last part is written. So I think you have to split your r.id if you want it to match to the id file
records = (r for r in SeqIO.pa ...
written 7.4 years ago by
Xtof • 170
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... Hi
I'm not sure why it doesn't work, but you might consider using a regular expression instead
import re
pattern = re.compile('[KR][^P]') #it is the regular expression. it means K or R and follow by anything but P
peptides = pattern.split(sequence) #the split method split on the re you define just ...
written 7.5 years ago by
Xtof • 170
• updated
7.5 years ago by
Damian Kao ♦ 15k
Latest awards to Xtof
Popular Question
5.4 years ago,
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For 10 permanent positions for bioinformaticians or biostatisticians at the Institute Pasteur, Paris, France
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For A: Problems With A Python Script Used To Simulate Protein Cutting By Trypsin
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For A: Problems With A Python Script Used To Simulate Protein Cutting By Trypsin
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For A: Problems With A Python Script Used To Simulate Protein Cutting By Trypsin
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For A: Find Sequences In Fasta File From List Of Id'S
Teacher
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For A: Problems With A Python Script Used To Simulate Protein Cutting By Trypsin
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