User: Xtof

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Xtof170
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Paris
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Posts by Xtof

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Job: Bioinformatician permanent Position in Statistical Genetics At the Institut Pasteur of Paris
... PERMANENT ENGINEER POSITION JOB DESCRIPTION Applications are invited for a permanent engineer position at the Institut Pasteur of Paris (France) in the Statistical Genetics group. The engineer will work closely with researchers from the group and with collaborators from the Center of Bioinformati ...
statistical genetics job data integration written 2.4 years ago by Xtof170
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Job: 10 permanent position of bioinformaticians/biostatisticians at the Institut Pasteur (France)
... Ten permanent positions in Bioinformatics and Biostatistics  Bioinformatics, biostatistics and integrative biology have emerged as strategic priorities for the Institut Pasteur. A new “Center for Bioinformatics, Biostatistics and Integrative Biology” (C3BI – https://c3bi.pasteur.fr) has been create ...
assembly chip-seq job rna-seq R written 3.9 years ago by Xtof170
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Job: 10 permanent positions for bioinformaticians or biostatisticians at the Institute Pasteur, Paris, France
... The new direction of Institut Pasteur has defined bioinformatics and systems biology as strategic priorities. A « Center for Bioinformatics, Biostatistics and Integrative Biology » has been recently created on the Parisian Campus. The objective of this center is to federate and strengthen capacities ...
assembly next-gen chip-seq job R rna-seq written 4.7 years ago by Xtof170
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Answer: A: Rna-Seq : Check For Fusions With A Known Position
... Hi You can try using the software CRAC (http://crac.gforge.inria.fr/). It is a mapping software specially designed for finding fusion. I saw it in a meeting last week and it seemed quite performant. ...
written 6.2 years ago by Xtof170
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Comment: C: Count 5'End Mapped To A Specific Genomic Position
... If the reads are on the reverse strand you won't have the 5' end but the 3' end. In that case you'll have to add the read length to the 3' end position to get the 5'end position ...
written 6.3 years ago by Xtof170
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Answer: A: Find Sequences In Fasta File From List Of Id'S
... Hi Arron I don't use Biopython but I think that for the first sequence of your fasta file for example r.id gives you "gnl|TC-DB|P0A334". But into the id file only the last part is written. So I think you have to split your r.id if you want it to match to the id file records = (r for r in SeqIO.pa ...
written 6.7 years ago by Xtof170
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Answer: A: Problems With A Python Script Used To Simulate Protein Cutting By Trypsin
... Hi I'm not sure why it doesn't work, but you might consider using a regular expression instead import re pattern = re.compile('[KR][^P]') #it is the regular expression. it means K or R and follow by anything but P peptides = pattern.split(sequence) #the split method split on the re you define just ...
written 6.8 years ago by Xtof170 • updated 6.8 years ago by Damian Kao15k

Latest awards to Xtof

Appreciated 4.7 years ago, created a post with more than 5 votes. For A: Problems With A Python Script Used To Simulate Protein Cutting By Trypsin
Appreciated 5.7 years ago, created a post with more than 5 votes. For A: Problems With A Python Script Used To Simulate Protein Cutting By Trypsin
Good Answer 5.7 years ago, created an answer that was upvoted at least 5 times. For A: Problems With A Python Script Used To Simulate Protein Cutting By Trypsin
Teacher 5.7 years ago, created an answer with at least 3 up-votes. For A: Find Sequences In Fasta File From List Of Id'S
Teacher 5.7 years ago, created an answer with at least 3 up-votes. For A: Problems With A Python Script Used To Simulate Protein Cutting By Trypsin

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