User: syxbestmayer

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Posts by syxbestmayer

<prev • 28 results • page 1 of 3 • next >
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Comment: C: What are chimeric reads?
... In RNA-seq chimeric reads may indicate the presence of circRNAs ...
written 24 months ago by syxbestmayer0
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Comment: A: How To Use Coordinates In Order To Extract Sequences In Fasta File?
... I have found my error,it is my question of format.Thank you! ...
written 3.6 years ago by syxbestmayer0
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Comment: A: How To Use Coordinates In Order To Extract Sequences In Fasta File?
... Error: cannot construct subsequence with negative offset or length < 1 why I have this error? somebody can help me? ...
written 3.7 years ago by syxbestmayer0
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Comment: C: The soapfuse running problem
... can you give a link for ensembl gtf on hg19? At 2015-05-27 22:14:17, "airan on Biostar" <notifications@biostars.org> wrote: Activity on a post you are following on Biostar User airan wrote Comment: The soapfuse running problem: bwa index is complaining because the transcript.fa is empty. You c ...
written 4.0 years ago by syxbestmayer0
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Comment: C: The soapfuse running problem
... thank you very much.and how the transcript.fa is generated? At 2015-05-27 22:14:17, "airan on Biostar" <notifications@biostars.org> wrote: Activity on a post you are following on Biostar User airan wrote Comment: The soapfuse running problem: bwa index is complaining because the transcript.fa ...
written 4.0 years ago by syxbestmayer0
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Comment: C: The soapfuse running problem
... it contains nothing,i just want to know why At 2015-05-27 22:00:45, "airan on Biostar" <notifications@biostars.org> wrote: Activity on a post you are following on Biostar User airan wrote Comment: The soapfuse running problem: So? Can you check if it is there when soap crashes? Also check if / ...
written 4.0 years ago by syxbestmayer0
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Comment: C: The soapfuse running problem
... this file is generated by soapfuse. At 2015-05-27 21:49:27, "airan on Biostar" <notifications@biostars.org> wrote: Activity on a post you are following on Biostar User airan wrote Comment: The soapfuse running problem: This file /home/share/databases/transcript.fa /home/share/databases/transcr ...
written 4.0 years ago by syxbestmayer0
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Answer: A: The soapfuse running problem
... SOAPfuse is an open source tool developed for genome-wide detection of fusion transcripts from paired-end RNA-Seq data. And I want to used it to detect fusion gene.But I meet some difficulties.when I run the my command : perl SOAPfuse-S00-Generate_SOAPfuse_database.pl -wg /home/share/soapfuse_xsy ...
written 4.0 years ago by syxbestmayer0
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Comment: A: Gene Fusion Detection: Rna-Seq Data
... have you ever used SOAPfuse,can you tell me how to use SOAPfuse? the details of command. ...
written 4.0 years ago by syxbestmayer0
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The soapfuse running problem
... (ln -sf /home/share/databases/transcript.fa /home/share/databases/transcript_index_bwa/transcript.fa) && (/home/share/tool/SOAPfuse-v1.26/source/bin/aln_bin/bwa index /home/share/databases/transcript_index_bwa/transcript.fa) [bwa_index] Pack FASTA... [bns_fasta2bntseq] zero length sequence. ...
soapfuse problem written 4.0 years ago by syxbestmayer0

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