User: Selenocysteine

gravatar for Selenocysteine
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Dublin, Ireland
Last seen:
11 months ago
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4 years, 2 months ago
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Posts by Selenocysteine

<prev • 75 results • page 1 of 8 • next >
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Comment: A: install Primer3 on Ubuntu
... It says here that it was a bug corrected in the latest version of primer3: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=853621 Are you installing primer3 2.3.7-4 or above? ...
written 11 months ago by Selenocysteine550
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Comment: C: Correspondence between unlabeled/different tips of different phylogenetic trees
... Do you actually know the species corresponding to each tip on each tree, or are they unknown? ...
written 12 months ago by Selenocysteine550
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Answer: A: Import files in newick format with python script
... There are a lot of mistakes in this script. First of all, you initially declare "contents" as a list, which is not needed. Second, when you try to convert it into a tree, you pass the string "contents" instead of the variable contents. Moreover, to read a tree from a file in ete3 you just need to pa ...
written 12 months ago by Selenocysteine550
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Answer: C: Faster way to get GC content and Coverage from .fasta
... I can suggest you this script from one of my colleagues ;) https://github.com/oXis/gtool ...
written 12 months ago by Selenocysteine550
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Comment: C: Lookup Table error in Sequence Alignment with R
... Yes it is standard, but maybe for some reason this library doesn't recognise it. Did you check for all characters which are not standard amino acids or just X? ...
written 12 months ago by Selenocysteine550
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Comment: C: Lookup Table error in Sequence Alignment with R
... I think that the issue might be that you have some non-standard characters in your sequences. Can you check that you just have aminoacids, no "X"s and no other letters which do not correspond to an aa? ...
written 12 months ago by Selenocysteine550
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Comment: C: Lookup Table error in Sequence Alignment with R
... Which libraries are you using to import the fasta and to align the sequences? ...
written 12 months ago by Selenocysteine550
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Answer: A: QTL /linkage trait mapping
... http://www.rqtl.org/tutorials/ and the associated book are state of the art to me :D ...
written 13 months ago by Selenocysteine550
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Comment: C: boxplot in edgeR
... Ancient gaelic indeed. Anyway, what do you mean it doesn't work? Which error message do you get? ...
written 13 months ago by Selenocysteine550
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Comment: C: boxplot in edgeR
... Maybe you have too many outliers (the bars seem indeed to be squeezed at the bottom of the plot). What happens if you use: boxplot(lcpm, las = 2, col = group$Sample, main = "", outline = FALSE) ? ...
written 13 months ago by Selenocysteine550

Latest awards to Selenocysteine

Appreciated 12 months ago, created a post with more than 5 votes. For A: Keeping pheatmap colour range the same for different data sets
Teacher 14 months ago, created an answer with at least 3 up-votes. For A: Retrieving clinical trial data using R program
Scholar 16 months ago, created an answer that has been accepted. For A: Unusual pyramid plot helpin R or matplotlib
Teacher 16 months ago, created an answer with at least 3 up-votes. For A: Retrieving clinical trial data using R program
Teacher 17 months ago, created an answer with at least 3 up-votes. For A: Retrieving clinical trial data using R program
Popular Question 23 months ago, created a question with more than 1,000 views. For Best tool for generating a phylogenetic tree based on gene sequences
Popular Question 23 months ago, created a question with more than 1,000 views. For Genome-wide homology human versus mouse
Popular Question 23 months ago, created a question with more than 1,000 views. For Best tool for generating a phylogenetic tree based on gene sequences
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Inferring pedigree from SNP genotyping data
Teacher 2.4 years ago, created an answer with at least 3 up-votes. For A: Retrieving clinical trial data using R program
Supporter 2.8 years ago, voted at least 25 times.
Scholar 2.8 years ago, created an answer that has been accepted. For A: Bio.SearchIO.HmmerIO only showing the best score domain
Scholar 2.8 years ago, created an answer that has been accepted. For A: Bio.SearchIO.HmmerIO only showing the best score domain
Teacher 2.8 years ago, created an answer with at least 3 up-votes. For A: Retrieving clinical trial data using R program
Popular Question 2.9 years ago, created a question with more than 1,000 views. For Genome-wide homology human versus mouse
Scholar 3.0 years ago, created an answer that has been accepted. For A: Bio.SearchIO.HmmerIO only showing the best score domain
Teacher 3.8 years ago, created an answer with at least 3 up-votes. For A: Retrieving clinical trial data using R program

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