User: christianhinze

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Posts by christianhinze

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Tools to remove ambient RNA from single-nuclei data
... Dear all, can anybody recommend a good tool to remove ambient RNA from single-nuclei data? Thanks, Chris ...
ambient rna single-nuclei rna-seq written 9 weeks ago by christianhinze0
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Samtools MPILEUP on single-end/paired-end data
... Hi everybody, for variant calling, i am using samtools mpileup. as far as i know, mpileup is by default ignoring certain reads (duplicate, failed QC, non-primary, unmapped). my question, how is its default handling of single-end and paired-end data? for paired-end data, i have the impression, it ...
paired-end samtools mpileup single-end written 5.8 years ago by christianhinze0 • updated 5.8 years ago by Biostar ♦♦ 20

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Popular Question 5.6 years ago, created a question with more than 1,000 views. For Samtools MPILEUP on single-end/paired-end data

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